Scaffold Ga0209674

Basic Information
Taxon OID	3300025226 Open in IMG/M
Scaffold ID	Ga0209674_100024 Open in IMG/M
Source Dataset Name	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025226 Open in IMG/M

Scaffold ID

Ga0209674_100024 Open in IMG/M

Source Dataset Name

Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	535481
Total Scaffold Genes	484 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	328 (67.77%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

535481

Total Scaffold Genes

484 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

328 (67.77%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	35.6667	Long. (^o)	-78.5097	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

35.6667

Long. (^o)

-78.5097

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023377	Metagenome / Metatranscriptome	210	Y
F031516	Metagenome / Metatranscriptome	182	Y
F044583	Metagenome / Metatranscriptome	154	Y
F050419	Metagenome / Metatranscriptome	145	Y
F051255	Metagenome / Metatranscriptome	144	Y
F070201	Metagenome / Metatranscriptome	123	Y
F095729	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209674_100024104	F051255	GAGG	MYAAAAIAPVTQQAANDWARSQAARTMVRAAMNSNAVIYRRTWPTLEAIETLGEAEYDPTLKFDGFMDSTLDLRDGLSVVEVFAPICDCDALQEFALLRGHR
Ga0209674_100024253	F095729	N/A	MPAADVAMPCNHSKETTVKIALRQIALVSTLLATAAFPLLSHAQDVRREDRVLHFLDSGHIDANKDGMVSKKEFMDAMSKTWDMHMSDAKKADPQMPKDKMTLQQYLEFSKMFGLNIGS
Ga0209674_100024361	F023377	AGGAG	MTRHPVRPPRATRAALVTALLLAAAGAQAMTVSYQCTGRRLLTAELTPRKGQLHFEGKDWTVQRVPDKNMARYIDKKDEIEVVTKDRTLTFTHGTETLQCFLYSDALPGDAPRTTN
Ga0209674_100024403	F031516	N/A	MMHFDTAQMSAITQAHFFSRVAEFIRDQTTVPAYRQAALDTTLRTALWAPHWATLRDASEHDAALFMCFLLACATLGVDHTRAAEAVRQSSQPETSMKLFLSERGLLRFSAFDVPDLTRPGAEA
Ga0209674_100024467	F044583	GAGG	MAGERAEGMMMSELLTPNQEILRNRIRFALRRATGFVFDIDAMLRKPELRAKRIGLWRDVADHELSSLLDQLETEFQADAADHDDDADRTVIIHRPEAGAAHR
Ga0209674_10002460	F050419	GGAG	MTNASRPTFLRNFGRGASSSHRPPDLADMGTAFALDEALEGGAIDSIVPGDPSPPPLRAAVPVAPWRLWLGRKLGA
Ga0209674_10002461	F070201	GGAG	MRTVQLHSLTWGTITAAVGCAVWLSSSDQAALFCSVGYRATSQAMGIDIPAEPTRAGKSAQSAGSSAARQMQAEAG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209674_100024

Overview

Ecosystem & Geography

Associated Families

Sequences