Scaffold Ga0207913_1027429

Overview

Basic Information

• Taxon OID: 3300025188
• Scaffold ID: Ga0207913_1027429
• Source Dataset Name: Marine microbial communities from the Deep Atlantic Ocean - MP2913 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 895
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West of Santa Cruz de la Palma, Atlantic Ocean
• Coordinates
  • Lat. (^o): 29.97
  • Long. (^o): -23.69
  • Depth (m): 4003.49

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F084707	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207913_10274292	F084707	N/A	MDVFEEIVIFVVSNGYYFASIPFIIGIIGAILKANQVF
Ga0207913_10274293	F000245	N/A	MINFKEYLKEKKDVWKGYNKKLDKYVSDEIKKRKLARFPVNATDDIKMRMKPNKPAFKFPSPSGSMMVHVFLRPMEGKKGLVAFNYQLEDK