Scaffold Ga0209337_1120517

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1120517
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1184
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006918	Metagenome	362	Y
F098227	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_11205171	F006918	N/A	MRDFNITRNEGEFYHAKVTDSYGNEYDNYFKTASEANDWVYYIWDQEEWFN
Ga0209337_11205174	F098227	N/A	MYEAIEHYKVYKQKQNELQQAKQEMSKFINQLVKKNGTTKY