Metagenome Family F098227

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098227
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	37 residues
Representative Sequence	MYEALEHYKVYKQKQIAKAEMDKLINKLIAKNGTTKY
Number of Associated Samples	68
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	8.65 %
% of genes from short scaffolds (< 2000 bps)	84.62 %
Associated GOLD sequencing projects	58
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (49.038 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (53.846 % of family members)
Environment Ontology (ENVO)	Unclassified (98.077 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (97.115 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.23% β-sheet: 0.00% Coil/Unstructured: 50.77%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF03801	Ndc80_HEC	0.96
PF00118	Cpn60_TCP1	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	Cell cycle control, cell division, chromosome partitioning [D]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.96 %
Unclassified	root	N/A	49.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.04 %
cellular organisms	root	All Organisms → cellular organisms	29.81 %
Viruses	superkingdom	All Organisms → Viruses	21.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.04 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.35 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.04 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	29.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.35 %
Virus NIOZ-UU157	species	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.04 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	27.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.35 %
Virus NIOZ-UU157	species	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.04 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	27.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.35 %
Virus NIOZ-UU157	species	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.04 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	27.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.35 %
Virus NIOZ-UU157	species	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	4.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000101\|DelMOSum2010_c10229628	Not Available	599	Open in IMG/M
3300000116\|DelMOSpr2010_c10007187	Not Available	6010	Open in IMG/M
3300001450\|JGI24006J15134_10012053	Not Available	4205	Open in IMG/M
3300001450\|JGI24006J15134_10022081	All Organisms → cellular organisms → Bacteria → Proteobacteria	2910	Open in IMG/M
3300001450\|JGI24006J15134_10024606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2718	Open in IMG/M
3300001450\|JGI24006J15134_10038629	All Organisms → Viruses → Predicted Viral	2037	Open in IMG/M
3300001450\|JGI24006J15134_10042879	All Organisms → Viruses → Predicted Viral	1903	Open in IMG/M
3300001450\|JGI24006J15134_10045223	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	1839	Open in IMG/M
3300001450\|JGI24006J15134_10046802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1796	Open in IMG/M
3300001450\|JGI24006J15134_10082132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1203	Open in IMG/M
3300001450\|JGI24006J15134_10102858	All Organisms → Viruses → Predicted Viral	1022	Open in IMG/M
3300001450\|JGI24006J15134_10142116	Not Available	798	Open in IMG/M
3300001450\|JGI24006J15134_10224642	Not Available	556	Open in IMG/M
3300006735\|Ga0098038_1204472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300006751\|Ga0098040_1029583	All Organisms → Viruses → Predicted Viral	1752	Open in IMG/M
3300006752\|Ga0098048_1209448	Not Available	574	Open in IMG/M
3300006754\|Ga0098044_1418022	Not Available	502	Open in IMG/M
3300006789\|Ga0098054_1128793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	940	Open in IMG/M
3300006789\|Ga0098054_1167018	Not Available	809	Open in IMG/M
3300006793\|Ga0098055_1165684	Not Available	847	Open in IMG/M
3300006793\|Ga0098055_1312832	Not Available	586	Open in IMG/M
3300006793\|Ga0098055_1370830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	531	Open in IMG/M
3300006803\|Ga0075467_10689435	Not Available	520	Open in IMG/M
3300006922\|Ga0098045_1105099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	664	Open in IMG/M
3300006925\|Ga0098050_1193565	Not Available	505	Open in IMG/M
3300006928\|Ga0098041_1246760	Not Available	569	Open in IMG/M
3300006990\|Ga0098046_1071663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	787	Open in IMG/M
3300007542\|Ga0099846_1207498	Not Available	689	Open in IMG/M
3300008050\|Ga0098052_1407717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300008217\|Ga0114899_1201150	Not Available	631	Open in IMG/M
3300008218\|Ga0114904_1096257	Not Available	724	Open in IMG/M
3300008218\|Ga0114904_1143764	Not Available	562	Open in IMG/M
3300008220\|Ga0114910_1145486	Not Available	677	Open in IMG/M
3300009423\|Ga0115548_1089146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1021	Open in IMG/M
3300009425\|Ga0114997_10440359	Not Available	700	Open in IMG/M
3300009425\|Ga0114997_10747304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M
3300009433\|Ga0115545_1047543	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	1660	Open in IMG/M
3300009433\|Ga0115545_1118234	Not Available	946	Open in IMG/M
3300009433\|Ga0115545_1129728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	892	Open in IMG/M
3300009435\|Ga0115546_1126888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	911	Open in IMG/M
3300009496\|Ga0115570_10352116	Not Available	630	Open in IMG/M
3300009602\|Ga0114900_1044357	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	1398	Open in IMG/M
3300009605\|Ga0114906_1167946	Not Available	749	Open in IMG/M
3300010149\|Ga0098049_1197817	Not Available	616	Open in IMG/M
3300010150\|Ga0098056_1292714	Not Available	537	Open in IMG/M
3300010151\|Ga0098061_1093440	All Organisms → Viruses → Predicted Viral	1125	Open in IMG/M
3300010151\|Ga0098061_1203177	Not Available	702	Open in IMG/M
3300010153\|Ga0098059_1060117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1520	Open in IMG/M
3300010153\|Ga0098059_1191706	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	798	Open in IMG/M
3300010153\|Ga0098059_1349785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300017709\|Ga0181387_1119010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300017721\|Ga0181373_1062880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	667	Open in IMG/M
3300017735\|Ga0181431_1016969	All Organisms → Viruses → Predicted Viral	1706	Open in IMG/M
3300017738\|Ga0181428_1073056	Not Available	800	Open in IMG/M
3300017740\|Ga0181418_1032019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1343	Open in IMG/M
3300017744\|Ga0181397_1046657	All Organisms → Viruses → Predicted Viral	1206	Open in IMG/M
3300017748\|Ga0181393_1129954	Not Available	635	Open in IMG/M
3300017755\|Ga0181411_1035452	All Organisms → Viruses → Predicted Viral	1573	Open in IMG/M
3300017757\|Ga0181420_1086609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	973	Open in IMG/M
3300017757\|Ga0181420_1131966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	753	Open in IMG/M
3300017757\|Ga0181420_1228725	Not Available	533	Open in IMG/M
3300017758\|Ga0181409_1108457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	825	Open in IMG/M
3300017764\|Ga0181385_1125323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	784	Open in IMG/M
3300017764\|Ga0181385_1186339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	627	Open in IMG/M
3300017769\|Ga0187221_1225614	Not Available	535	Open in IMG/M
3300017770\|Ga0187217_1237701	Not Available	597	Open in IMG/M
3300017772\|Ga0181430_1157737	Not Available	658	Open in IMG/M
3300017776\|Ga0181394_1024750	Not Available	2135	Open in IMG/M
3300017781\|Ga0181423_1042538	Not Available	1826	Open in IMG/M
3300021085\|Ga0206677_10028258	All Organisms → Viruses → Predicted Viral	3203	Open in IMG/M
3300021375\|Ga0213869_10355559	Not Available	610	Open in IMG/M
3300021957\|Ga0222717_10070448	All Organisms → Viruses → Predicted Viral	2230	Open in IMG/M
3300025070\|Ga0208667_1025239	All Organisms → Viruses → Predicted Viral	1110	Open in IMG/M
3300025085\|Ga0208792_1034187	Not Available	998	Open in IMG/M
3300025085\|Ga0208792_1047284	Not Available	814	Open in IMG/M
3300025096\|Ga0208011_1006688	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	3388	Open in IMG/M
3300025108\|Ga0208793_1038875	All Organisms → Viruses → Predicted Viral	1529	Open in IMG/M
3300025110\|Ga0208158_1083968	Not Available	757	Open in IMG/M
3300025132\|Ga0209232_1029968	Not Available	2087	Open in IMG/M
3300025138\|Ga0209634_1079353	Not Available	1513	Open in IMG/M
3300025138\|Ga0209634_1190389	Not Available	795	Open in IMG/M
3300025138\|Ga0209634_1199038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	768	Open in IMG/M
3300025168\|Ga0209337_1006617	Not Available	7770	Open in IMG/M
3300025168\|Ga0209337_1019716	All Organisms → cellular organisms → Bacteria → Proteobacteria	3957	Open in IMG/M
3300025168\|Ga0209337_1031321	All Organisms → Viruses → Predicted Viral	2946	Open in IMG/M
3300025168\|Ga0209337_1050248	Not Available	2168	Open in IMG/M
3300025168\|Ga0209337_1120517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1184	Open in IMG/M
3300025168\|Ga0209337_1170691	Not Available	918	Open in IMG/M
3300025168\|Ga0209337_1191444	Not Available	841	Open in IMG/M
3300025168\|Ga0209337_1209178	Not Available	784	Open in IMG/M
3300025168\|Ga0209337_1289379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	601	Open in IMG/M
3300025168\|Ga0209337_1332200	Not Available	531	Open in IMG/M
3300025168\|Ga0209337_1348212	Not Available	509	Open in IMG/M
3300025300\|Ga0208181_1074581	Not Available	669	Open in IMG/M
3300025301\|Ga0208450_1098993	Not Available	640	Open in IMG/M
3300025305\|Ga0208684_1081394	Not Available	833	Open in IMG/M
3300025632\|Ga0209194_1052472	All Organisms → Viruses → Predicted Viral	1163	Open in IMG/M
3300025652\|Ga0208134_1041164	All Organisms → Viruses → Predicted Viral	1535	Open in IMG/M
3300025816\|Ga0209193_1095240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	748	Open in IMG/M
3300025890\|Ga0209631_10048701	All Organisms → Viruses → Predicted Viral	2787	Open in IMG/M
3300027170\|Ga0208963_1005099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2754	Open in IMG/M
3300031766\|Ga0315322_10361868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	978	Open in IMG/M
3300032088\|Ga0315321_10460187	Not Available	779	Open in IMG/M
3300034654\|Ga0326741_016900	All Organisms → Viruses → Predicted Viral	1313	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	62.50%
Strait	Environmental → Aquatic → Marine → Strait	17.31%
Pelagic	Environmental → Aquatic → Marine → Pelagic	7.69%
Coastal	Environmental → Aquatic → Marine → Coastal	3.85%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	3.85%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.88%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	62.50%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	17.31%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	7.69%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.92%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	53.85%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	17.31%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	8.65%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	7.69%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	2.88%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	2.88%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.92%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.96%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.96%
Filtered Seawater	Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater	0.96%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.96%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006751	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG	Environmental	Open in IMG/M
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental	Open in IMG/M
3300006754	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300006793	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG	Environmental	Open in IMG/M
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental	Open in IMG/M
3300006922	Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG	Environmental	Open in IMG/M
3300006925	Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG	Environmental	Open in IMG/M
3300006928	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG	Environmental	Open in IMG/M
3300006990	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG	Environmental	Open in IMG/M
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental	Open in IMG/M
3300008050	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG	Environmental	Open in IMG/M
3300008217	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215	Environmental	Open in IMG/M
3300008218	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6	Environmental	Open in IMG/M
3300008220	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908	Environmental	Open in IMG/M
3300009423	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423	Environmental	Open in IMG/M
3300009425	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136	Environmental	Open in IMG/M
3300009433	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330	Environmental	Open in IMG/M
3300009435	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413	Environmental	Open in IMG/M
3300009496	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524	Environmental	Open in IMG/M
3300009602	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231	Environmental	Open in IMG/M
3300009605	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9	Environmental	Open in IMG/M
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental	Open in IMG/M
3300010150	Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG	Environmental	Open in IMG/M
3300010151	Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG	Environmental	Open in IMG/M
3300010153	Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG	Environmental	Open in IMG/M
3300017709	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27	Environmental	Open in IMG/M
3300017721	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG	Environmental	Open in IMG/M
3300017735	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21	Environmental	Open in IMG/M
3300017738	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12	Environmental	Open in IMG/M
3300017740	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13	Environmental	Open in IMG/M
3300017744	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23	Environmental	Open in IMG/M
3300017748	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21	Environmental	Open in IMG/M
3300017755	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09	Environmental	Open in IMG/M
3300017757	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22	Environmental	Open in IMG/M
3300017758	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30	Environmental	Open in IMG/M
3300017764	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11	Environmental	Open in IMG/M
3300017769	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2)	Environmental	Open in IMG/M
3300017770	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)	Environmental	Open in IMG/M
3300017772	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10	Environmental	Open in IMG/M
3300017776	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23	Environmental	Open in IMG/M
3300017781	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14	Environmental	Open in IMG/M
3300021085	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015	Environmental	Open in IMG/M
3300021375	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300025070	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025085	Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)	Environmental	Open in IMG/M
3300025096	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)	Environmental	Open in IMG/M
3300025108	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)	Environmental	Open in IMG/M
3300025110	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)	Environmental	Open in IMG/M
3300025132	Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)	Environmental	Open in IMG/M
3300025138	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)	Environmental	Open in IMG/M
3300025168	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)	Environmental	Open in IMG/M
3300025300	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 (SPAdes)	Environmental	Open in IMG/M
3300025301	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 (SPAdes)	Environmental	Open in IMG/M
3300025305	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05 (SPAdes)	Environmental	Open in IMG/M
3300025632	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)	Environmental	Open in IMG/M
3300025652	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)	Environmental	Open in IMG/M
3300025816	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)	Environmental	Open in IMG/M
3300025890	Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)	Environmental	Open in IMG/M
3300027170	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_35 (SPAdes)	Environmental	Open in IMG/M
3300031766	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515	Environmental	Open in IMG/M
3300032088	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515	Environmental	Open in IMG/M
3300034654	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_102296282	3300000101	Marine	MYEALEHYKVYKQKQKVKQELDKLIHKLILKNGVTNI*
DelMOSpr2010_100071873	3300000116	Marine	MYEALEHWKQYKQEQAAKAEMDKFLNKLIAKNGTTKY*
JGI24006J15134_100120535	3300001450	Marine	MYEAIEHWKQYKQKQALAELDSLIKSLIAKNGTTKY*
JGI24006J15134_100220819	3300001450	Marine	MYEAIEHYKVYKQKQIAKAEMDKLINKLITKNGTTKY*
JGI24006J15134_100246062	3300001450	Marine	MYEAIEHYKVYKQKQNELQQAKQEMSKFINQLVKKNGTTKY*
JGI24006J15134_100386292	3300001450	Marine	MYEAIEHYKVYKQKQIAKKEMDKLLNKLIKKNGTTKY*
JGI24006J15134_100428793	3300001450	Marine	MYEALEHWKQYKQKQALAELDSLIKSLIAKNGTTKY*
JGI24006J15134_100452236	3300001450	Marine	MYEAIAHWKQYKQEKELAKAKQEMDKFLNKLITKNGATKY*
JGI24006J15134_100468027	3300001450	Marine	MYEAIEHWKQYQKKKAKAKAEMDKLINKLIAQNGVTNY*
JGI24006J15134_100821325	3300001450	Marine	MYETLEYWKQYKKRQIAKAEMDKFLNKLTKKNGTKEI*
JGI24006J15134_101028582	3300001450	Marine	MYEAIEHYKVYKQKQKAKQELDKLINKLIAKNGTTKY*
JGI24006J15134_101421162	3300001450	Marine	MYEALEHWKQYKQKQIAKEEMDKLLNELIAKNGTTNY*
JGI24006J15134_102246422	3300001450	Marine	MYEAIEHYKVYKQKQIAKAEMDKLINKLIAKNGTTKY*
Ga0098038_12044721	3300006735	Marine	MYEVLEHWKQYKQRQVEKAKMDKFINKLITKNGTTKY*
Ga0098040_10295836	3300006751	Marine	MYETLEHWKQYKQKQIAKAEMNKLINKLIAKNGITKY*
Ga0098048_12094481	3300006752	Marine	MYEVLEHWKQYKQEQIAKAEMDKFLTELVKKNGTTKY*
Ga0098044_14180223	3300006754	Marine	MYEALEHHKVYKQKQKAKQDLDKLINKLIAKNGTTKY*
Ga0098054_11287933	3300006789	Marine	MYEALEHYKVYKQKQIAKAEMDKLINKLVTKNGITKY*
Ga0098054_11670182	3300006789	Marine	MYEAIEHYKVYKQKQKVKQELDKLINKLILKNGVTNI*
Ga0098055_11656844	3300006793	Marine	AIEHYKVYKQKQKVKQELDKLINKLILKNGVTNI*
Ga0098055_13128322	3300006793	Marine	MYETLEHWKQYKQKQIAKAEMNKLINKLIAKNGTTKY*
Ga0098055_13708302	3300006793	Marine	MYEALEHWKQYKQEQKEKAKQEVDKLLTQLAAKNGVTKY*
Ga0075467_106894352	3300006803	Aqueous	MYEALEHYKVYKQKQKVKQELDKLIHKLIRKNGVTNI*
Ga0098045_11050991	3300006922	Marine	MYEALEHWKQYKQKQIAKAEMDKLINKLITRNGTTKY*
Ga0098050_11935653	3300006925	Marine	YETLEHWKQYKQKQIAKAEMNKLINKLIAKNGITKY*
Ga0098041_12467602	3300006928	Marine	MYEAIEHYKVYKQKQIAKAEMDKLIKKLIAKNGTTKY*
Ga0098046_10716632	3300006990	Marine	MYEALEHWKQYKQKQIAKAEMDKLINKLITKNGITKH*
Ga0099846_12074984	3300007542	Aqueous	MYEAIEHYKVYKQKQKVKQELDKLIHKLIRKNGVTNI*
Ga0098052_14077171	3300008050	Marine	VKYRIIYEALEHWKQYKKEQKAKQEMDKFLNKLIVKNGTTKY*
Ga0114899_12011501	3300008217	Deep Ocean	MYEALEHYKVYKQKQIAKAEMDKLINKLIAKNGTTKY*
Ga0114904_10962571	3300008218	Deep Ocean	MYEALEHYKVYKQKQIAKAEIDKLINKLIAKNGTTKY*
Ga0114904_11437641	3300008218	Deep Ocean	MYEALENWKQYKQEKAKQVAKQEMDKFLNKIIAKNGVTKI*
Ga0114910_11454861	3300008220	Deep Ocean	MYEALEHHKVYKQKQKAKQDLDKLINKLIAKNGATKY*
Ga0115548_10891462	3300009423	Pelagic Marine	MYETLEHWKVYKQRQVEKAKMDKFLNKLITKNGTTEV*
Ga0114997_104403592	3300009425	Marine	MYETLEYWKQYKQEKEKLKLAKIEMDKFLTKLIAKNGITKY*
Ga0114997_107473041	3300009425	Marine	MYETLEHWKQYKQKQKAKQEMDKFLNKLTTKNGTTKY*
Ga0115545_10475431	3300009433	Pelagic Marine	YEALEHYKVYKQKQKVKQELDKLINKLILKNGVTHI*
Ga0115545_11182343	3300009433	Pelagic Marine	MYEALEHYKVYKQKQKVKQELDKLINKLILKNGVTNI*
Ga0115545_11297284	3300009433	Pelagic Marine	MYETLEHWKQYKQRQVEKAKMDKFLNKLITKNGTTEI*
Ga0115546_11268884	3300009435	Pelagic Marine	MYEVLEHWKQYKQRQVEKAKMDKFLNKLITKNGTTEI*
Ga0115570_103521162	3300009496	Pelagic Marine	MYEALEHYKVYKQKQKVKQELDKLIHKLILKNGVTHI*
Ga0114900_10443574	3300009602	Deep Ocean	MYEALENWKQYKQEKAKQLAKQEMDKFLNKIIAKNGVTKI*
Ga0114906_11679463	3300009605	Deep Ocean	MYEALEHHKVYKQKQIAKAEIDKLINKLIAKNGATKY*
Ga0098049_11978172	3300010149	Marine	MYEALEHWKQYKQEQKEKAKQEVDKLLAQLAIKNGVTKY*
Ga0098056_12927142	3300010150	Marine	MYEALEHWKQYKQEQIAKAEMDKFLTELVKKNGTTKY*
Ga0098061_10934403	3300010151	Marine	MYEALEHWKQYKQEQIAKTEMDKFLTELVKKNGTTKY*
Ga0098061_12031772	3300010151	Marine	MYEALEHYKVYKQKQKAKQDLDKLINKLIAKNGTTKY*
Ga0098059_10601171	3300010153	Marine	MYEALEHYKVYKQKQVAKAELDKFLNKLITKNGTTKY*
Ga0098059_11917061	3300010153	Marine	MYEALEHWKQYKQEQKEKAKQEVDKLLNELAAKNGVTKY*
Ga0098059_13497852	3300010153	Marine	MYEALEHYKVYKQKQIAKAKMDKFLNKLIAKNGTTKY*
Ga0181387_11190102	3300017709	Seawater	MYEAIEHYKVYKQKQKAKQELDKLINKLIRKNGVTNI
Ga0181373_10628803	3300017721	Marine	MYEAIEHWKQYKQKQIAKAEMDKLINKLITRNGTTKY
Ga0181431_10169694	3300017735	Seawater	MYETLEHWKVYKQKQVEKAKMDKFINKLIKKNGTTEI
Ga0181428_10730562	3300017738	Seawater	MYEALEHHKVYKQKQIAKAEIDKLINKLIAKNGITKY
Ga0181418_10320191	3300017740	Seawater	DEALEHYKVYKQKQKVKQELDKLIHKLIRKNGVTNI
Ga0181397_10466574	3300017744	Seawater	MYETLEHWKQYKQRQVEKAKMDKFLNKLITKNGTTKY
Ga0181393_11299543	3300017748	Seawater	MYEVLEHWKQYKQRQVEKAKMDKFLNKLITKNGTTKY
Ga0181411_10354524	3300017755	Seawater	MYEVLEHWKQYKQEQAAKAEMDKFLNKLIAKNGTTKI
Ga0181420_10866092	3300017757	Seawater	MYEAIEHYKVYKQKQKVKQELDKLIHKLIRKNGVTNI
Ga0181420_11319661	3300017757	Seawater	MYEALEHWKQYKQEQAAKAEMDKFLNKLIAKNGTTKY
Ga0181420_12287252	3300017757	Seawater	MYEALEHYKVYKQKQKAKQDLDKLINKLIAKNGTTKY
Ga0181409_11084574	3300017758	Seawater	MYEAIEHYKVYKQKQKVKQELDKLIHKLILKNGVTNI
Ga0181385_11253233	3300017764	Seawater	MYETLEHWKQYKQRQVEKAKMDKFINKLIKKNGTTEI
Ga0181385_11863391	3300017764	Seawater	MYEAIEHWKQYKQKQIAKVEMDKLINKLITRNGTTKY
Ga0187221_12256143	3300017769	Seawater	MYETLEHWKQYKQRQIAKAEMDKFLNKLIKKNGTKEI
Ga0187217_12377012	3300017770	Seawater	MYEVLEHWKQYKQRQVEKEKMDKFLNKLITKNGTTKY
Ga0181430_11577372	3300017772	Seawater	MSEALEHHKVYKQKQIAKAEIDKLINKLIAKNGTTKY
Ga0181394_10247503	3300017776	Seawater	MYEALEHYKVYKQKQIAKAEIDKLINKLIAKNGTTKY
Ga0181423_10425385	3300017781	Seawater	MYEAIEHWKQYKQKQIAKVEMDKLIDKLITKNGTTKY
Ga0206677_100282587	3300021085	Seawater	MYEALEHYKVYKQKQKVKQELDKLIHKLIRKNGVTNI
Ga0213869_103555592	3300021375	Seawater	MYEALEHYKVYKQKQKVKQELDKLIHKLILKNGVTNI
Ga0222717_100704486	3300021957	Estuarine Water	MYEALEHWKQYKQEQAAKAEMDKFLNKLIAKNGTTKI
Ga0208667_10252393	3300025070	Marine	MYEVLEHWKQYKQRQVEKAKMDKFINKLITKNGTTKY
Ga0208792_10341875	3300025085	Marine	MYEVLEHWKQYKQRQVEKAKMDKFLNKLIKKNGTTKY
Ga0208792_10472843	3300025085	Marine	MYEAIEHYKVYKQKQKVKQELDKLINKLILKNGVTNI
Ga0208011_10066884	3300025096	Marine	MYETLEHWKQYKQKQIAKAEMNKLINKLIAKNGITKY
Ga0208793_10388751	3300025108	Marine	MYETLEHWKVYKQKQIAKAEMDKLINKLVTKNGITKY
Ga0208158_10839682	3300025110	Marine	MYEVLEHWKQYKQRQVEKAKMDKFLNKLIKKNGTTEI
Ga0209232_10299685	3300025132	Marine	MYEVLEHWKQYKQEQEKAVKLNVKAKQEMDKFLNQLIKKNGTTKY
Ga0209634_10793532	3300025138	Marine	MYEAIEHWKQYKQKQALAELDSLIKSLIAKNGTTKY
Ga0209634_11903893	3300025138	Marine	MYEAIEHYKVYKQKQIAKKEMDKLLNKLIKKNGTTKY
Ga0209634_11990383	3300025138	Marine	MYEAIEHYKVYKQKQKAKQELDKLINKLIAKNGTTKY
Ga0209337_100661712	3300025168	Marine	MYEALEHWKQYQKKKAKAKAEMDKLINKLIAQNGTTNY
Ga0209337_101971611	3300025168	Marine	MYEAIEHYKVYKQKQIAKAEMDKLINKLITKNGTTKY
Ga0209337_10313212	3300025168	Marine	MYEAIEHYKVYKQKQIAKAEMDKLINKLIAKNGTTKY
Ga0209337_105024810	3300025168	Marine	MYEAIAHWKQYKQEKELAKAKQEMDKFLNKLITKNGATKY
Ga0209337_11205174	3300025168	Marine	MYEAIEHYKVYKQKQNELQQAKQEMSKFINQLVKKNGTTKY
Ga0209337_11706911	3300025168	Marine	LNMYEALEHYKVYKQKQKVKQELDKFLDKLIAKNGTTKY
Ga0209337_11914441	3300025168	Marine	MYEAIEHWKQYKQEKHALAELDALINSLIAKNGTTKY
Ga0209337_12091782	3300025168	Marine	MYEAIEHYKVYKQKQIVKQEMDKFLNELIKKNGTTKY
Ga0209337_12893792	3300025168	Marine	MYEAIEHWKQYQKKKAKAKAEMDKLINKLIAQNGVTNY
Ga0209337_13322002	3300025168	Marine	MYEALEHWKQYKQKQIAKEEMDKLLNELIAKNGTTNY
Ga0209337_13482122	3300025168	Marine	MYETLEHWKVYKQRQIAKAEMDKFLNKLIKKNGTKEI
Ga0208181_10745811	3300025300	Deep Ocean	MYEALENWKQYKQEKAKQVAKQEMDKFLNKIIAKNGVTKI
Ga0208450_10989931	3300025301	Deep Ocean	MYEALEHHKVYKQKQIAKAEIDKLINKLIAKNGATKY
Ga0208684_10813942	3300025305	Deep Ocean	MYEALENWKQYKQEKAKQLAKQEMDKFLNKIIAKNGVTKI
Ga0209194_10524722	3300025632	Pelagic Marine	MYEALEHYKVYKQKQKVKQELDKLINKLILKNGVTNI
Ga0208134_10411641	3300025652	Aqueous	TNKNNNMYEALEHYKVYKQKQKVKQELDKLIHKLIRKNGVTNI
Ga0209193_10952403	3300025816	Pelagic Marine	MYETLEHWKQYKQRQVEKAKMDKFLNKLITKNGTTEI
Ga0209631_100487019	3300025890	Pelagic Marine	MYEALEHYKVYKQKQKVKQELDKLINKLILKNGVTHI
Ga0208963_10050993	3300027170	Marine	MYEALEHWKQYKQKQVAKAEIDKLINKLITKNGTTEY
Ga0315322_103618682	3300031766	Seawater	MYEALEHWKQYKQEQTAKAEMDKFLNKLIAKNGTTKI
Ga0315321_104601873	3300032088	Seawater	MYETLEHWKQYKQRQVEKAKMDKFLNKLITKNGITKY
Ga0326741_016900_439_552	3300034654	Filtered Seawater	MYEALEHWKQYKQKQIAKAEIDKFLAELTKKNGVTKY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F098227

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences