Scaffold Ga0209337_1050248

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1050248
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2168
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F001802	Metagenome / Metatranscriptome	632	Y
F007827	Metagenome	344	Y
F094392	Metagenome	106	Y
F098227	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_105024810	F098227	N/A	MYEAIAHWKQYKQEKELAKAKQEMDKFLNKLITKNGATKY
Ga0209337_10502482	F001802	N/A	MQTMKHLKNDYVQLGNLIYKPYTVCSLPANFGCIEFNSKEGISEWFNYKGYTYLFEKVAK
Ga0209337_10502483	F094392	N/A	MKEIDQKLDQWIYNSIIRAEIRALIVKEINKYKLNTNTNG
Ga0209337_10502484	F007827	AGG	MKLTNKQKRSVKRRVQLEQGVSTPGTRVFVSKKLYTRKAKHKK
Ga0209337_10502488	F000126	GAG	VVYVTITEKLNNMNKRDFKISINVGEWFLAEATDSYGNEYSNYFECLDEANDWIYYIWEQEDLFNSTNSQELLASAIAECVKIDEQAGREPALD