Scaffold Ga0209337_1022731

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1022731
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3616
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008782	Metagenome / Metatranscriptome	328	Y
F009300	Metagenome	320	Y
F024889	Metagenome	204	Y
F089534	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_102273111	F008782	N/A	MKKPIFRVFVSYEIKNKKVVTRKAITGILDTFVLTSNIKEIENDQELIDRICYINKKNLNKVDVIITSIDIENQYGETTDRFEDEY
Ga0209337_10227313	F009300	N/A	MIKWKKTTYPSTFIKLSDELAKVRSMLSADVYNKNTEKYRGKQEHSISQLGIFAELIARHLMENNKGIRYKAAPLLEERPVVEADLIMEGIGELNYIDVKGVKSGGGTLRVNFKAHNNPKKKITHYLFVQPLNSLYARFCWFTHKQVSEWTVVMSTYTECYELEIPKNN
Ga0209337_10227317	F089534	N/A	MKKRKLNSKNPKYKKDNEEKLVILKKVPFTGKAPGYGVWYKNEK
Ga0209337_10227319	F024889	N/A	MDSATIGALMIVGVAVLYIFALCYVESKIAGQRNEKLEKNIDKLDDKA