Scaffold Ga0209337_1019333

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1019333
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4006
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F005547	Metagenome	397	Y
F025414	Metagenome	202	Y
F106118	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_101933314	F025414	AGGAG	MQVGSLVRETMDGNVGVILAWENDGWLVNFPKHGMVFHMLPRLLEVVDASR
Ga0209337_101933315	F106118	GGAGG	MQVGDLVRCTTVDGKPVGLVVERFSPAHSRLDSPRLRPDIFYVLIPGYEDPFPIRTRQMELVNASR
Ga0209337_10193336	F005547	N/A	MIVWVMQGSYEGELFSSVHMTEKGCALACISDITEFLGVDDEETAMSVCDHYAESDGEPEPIEWDQEKLKHMTREELWKIFADWSELSWDRMADRSFYLDANRVEIQG
Ga0209337_10193337	F004771	GGAG	MSGNRIKKGDLVRMSTHDTGLVGIVVDRHPKAISTTRPQIGIMWIGGSGKVDWEPEPWLEVVSESR