Scaffold Ga0209337_1005173

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1005173
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8917
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018814	Metagenome	233	Y
F026159	Metagenome	199	Y
F084854	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100517311	F084854	AGG	MLYTLKVVATMIVAFTAGIVINRYLYKFFDWFLDAMEKWDEEDH
Ga0209337_10051735	F018814	AGGAGG	MDSTKSYVKVYQISAEDAEDFEFDYDVETTDLLTELVPNLDNWGGLGWMDLEEYDYNLQLREITFTLDTKWESPVEWLRNASSGTHYFANKLITMATIQKDETCVRGIAVMDGETLQNKTILEMTSEEVGKYYNDNETEYDLDTLDNQIWDSISQFANVCEQFYLERNEANDD
Ga0209337_10051739	F026159	AGGA	MKKFTLIDIVTMLGIASTIVVMLMYTTGCSMKFYKESPAAVQNCCDRVSAVNKEMDKFNRYCKIALFLANSENKKEVGNGIRKGAREAVNICKFVYKVETDDDLLAAGDHHDYHRVRSYVITEPDLNGGWINPGCDPAEIHCEGD