Scaffold Ga0209337_1000868

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1000868
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23889
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (5.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011800	Metagenome / Metatranscriptome	287	Y
F033604	Metagenome	177	Y
F089534	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100086819	F033604	N/A	MKRKKITVNIDSTYKYIQLWNGIFNLTDKELSILTAFIDVDNIIEEVNFCSVKNKKAVAQMVGLKDYNTLNNYIKKFKDKGAILKTDTTYKLNPFLKPNAETIEVTITRNE
Ga0209337_10008682	F089534	N/A	MKKRKLNSRNPKYNTEEKELVIIKKIPLTGKAKGHFVWYENKTK
Ga0209337_100086823	F011800	N/A	MSLINELIYISDGAALPSPYSLTITEFKNLDTKELAFVYFMVDHKSPFSVYEWEQRIIEVKNSIFDDKSKWAPSSKVLGACDKYEKLIETSAVRLLKAARESIVKLEKYFRSIDLTLVDDNGKPIFHAKDLITNLSNMGKVVDGLSRLEEIVKKEEQAANTNRGGVEVNKYSM