Scaffold Ga0209337_1000851

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1000851
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24129
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (27.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045198	Metagenome / Metatranscriptome	153	Y
F045797	Metagenome / Metatranscriptome	152	Y
F068236	Metagenome / Metatranscriptome	125	Y
F091012	Metagenome	108	Y
F098234	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100085110	F068236	AGGA	MLETTGKNRKFTHDQVIEVAGEYLKCKETGQWVSERDVENYEVEMLNIEIQQYYEQEQDKYY
Ga0209337_100085117	F045198	N/A	MKLKAEHIEQIASYMADSLEDHLDGVFWDGVARVLDEFDIDYEDIGDISDEDCEAIVQETRLIFAPKNDSL
Ga0209337_100085119	F098234	N/A	MDKVQLENRVKELTVLIEESSNNVKNLVEEQNSFTKRLDDLNKPKLSPAKFDELQHIVESACEVFELEVNDCEYELELDYDNRIQINHFDWSRCQEDLTQHIMDRMESVFAVTEDEE
Ga0209337_100085120	F091012	N/A	MENLWKRLKPAVKKQILAEEEQYPYMVKEIKSHLEGNLFWNDLPVGAVKQVINFSHNSLLDASMNDFMWGEKFIKKA
Ga0209337_10008519	F045797	N/A	MNILKTVKEDSSIYLETEFAGNKVYTKWRAYKIGELPKNFGCLEYETDVEGVNEWFNYKGYTYVRDNR