Scaffold Ga0209337_1000558

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1000558
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30180
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (12.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005706	Metagenome / Metatranscriptome	392	N
F016832	Metagenome / Metatranscriptome	244	Y
F070124	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100055832	F005706	N/A	MKQSKILEALGLTSQDIQNMLMNGYTMPEIAKKYKIEYISLVQAYKIQKKNFKYFDYIQYKKEVEDIKKVSFTFDKLYTEESLNENELLAYYKYEQKNKAYYE
Ga0209337_100055839	F016832	N/A	MSREISYTTRTFYVPANKIDTLVEFQGKCKENGHRSYSEVLLSLMEKYNEQ
Ga0209337_100055843	F070124	N/A	MEKNNQTNLEDLIKKLENLPVPERTCNIENETCESCSG