Scaffold Ga0209645_1031713

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1031713
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1942
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018286	Metagenome	236	Y
F030886	Metagenome	184	Y
F053549	Metagenome	141	Y
F059942	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10317132	F053549	GGA	MKVGDLVKWENVLNDSMDHYRVDYGVIIKMSKTGHSTHSAQVLFNDGELAWFDTQQLIVVSAH
Ga0209645_10317133	F059942	GGAGG	VKVGDLISFKPINFGLEDWSNPSIVMHEYESPNEGLWTIWCDGVFCVIDDENYEIVYLTS
Ga0209645_10317136	F018286	GGAG	MNMLTTFVLMGVIDSHDGVFATVELNTNPASNGGPATAVMPVTAFPCEISEGKVFFVVKMHEDQDAEIICQEEEKNENQPDPPDTCMH
Ga0209645_10317138	F030886	AGGA	MSYHDGIPPQYNTTGIGVVNPLRQIERKLKKIQDVLDNISDSSVLTANDLKAKLLKVIDD