Scaffold Ga0209645_1017458

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1017458
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2774
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003154	Metagenome / Metatranscriptome	504	Y
F103294	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10174581	F103294	AGGA	MTLAGWIMISFWLGFLMYGVATWAINRTFVQLKDIEKIELDELDRDNIN
Ga0209645_10174586	F003154	GGA	MDMLSTAMNIFGGTYKDERGWKHYRVQDKTYDIRFHPMTLEWECSCPAYKFSRGNKTCKHIKTIQNGSK