Metagenome / Metatranscriptome Family F103294

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103294
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	48 residues
Representative Sequence	MTLAGWIMISFWVGFLLYGVVSWAINRTFVQLQDIENIELDELDRDNIN
Number of Associated Samples	57
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	82.18 %
% of genes near scaffold ends (potentially truncated)	31.68 %
% of genes from short scaffolds (< 2000 bps)	75.25 %
Associated GOLD sequencing projects	47
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.485 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (32.673 % of family members)
Environment Ontology (ENVO)	Unclassified (44.554 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (79.208 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.74% β-sheet: 0.00% Coil/Unstructured: 40.26%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF02086	MethyltransfD12	2.97
PF04434	SWIM	0.99
PF01555	N6_N4_Mtase	0.99
PF13395	HNH_4	0.99
PF04851	ResIII	0.99
PF02543	Carbam_trans_N	0.99
PF07669	Eco57I	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0338	DNA-adenine methylase	Replication, recombination and repair [L]	2.97
COG3392	Adenine-specific DNA methylase	Replication, recombination and repair [L]	2.97
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.99
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.99
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.99
COG2192	Predicted carbamoyl transferase, NodU family	General function prediction only [R]	0.99
COG4279	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	0.99
COG4715	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	0.99
COG5431	Predicted nucleic acid-binding protein, contains SWIM-type Zn-finger domain	General function prediction only [R]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.49 %
All Organisms	root	All Organisms	48.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.49 %
cellular organisms	root	All Organisms → cellular organisms	24.75 %
Viruses	superkingdom	All Organisms → Viruses	23.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.49 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.76 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	22.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.49 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.76 %
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	22.77 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.49 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.76 %
Candidatus Woesearchaeota	phylum	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota	22.77 %
bacterium TMED198	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED198	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.49 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.76 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	22.77 %
bacterium TMED198	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED198	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000117\|DelMOWin2010_c10017672	All Organisms → Viruses → Predicted Viral	3801	Open in IMG/M
3300001965\|GOS2243_1082223	All Organisms → Viruses → Predicted Viral	1839	Open in IMG/M
3300002483\|JGI25132J35274_1004360	All Organisms → Viruses → Predicted Viral	3613	Open in IMG/M
3300005611\|Ga0074647_1006861	All Organisms → Viruses → Predicted Viral	2463	Open in IMG/M
3300006026\|Ga0075478_10028040	All Organisms → Viruses → Predicted Viral	1884	Open in IMG/M
3300006027\|Ga0075462_10019740	Not Available	2174	Open in IMG/M
3300006404\|Ga0075515_10006923	Not Available	812	Open in IMG/M
3300006802\|Ga0070749_10292276	Not Available	915	Open in IMG/M
3300006802\|Ga0070749_10299057	Not Available	903	Open in IMG/M
3300006802\|Ga0070749_10320036	Not Available	866	Open in IMG/M
3300006802\|Ga0070749_10324979	Not Available	858	Open in IMG/M
3300006802\|Ga0070749_10505903	Not Available	658	Open in IMG/M
3300006802\|Ga0070749_10525586	Not Available	643	Open in IMG/M
3300006802\|Ga0070749_10562730	Not Available	617	Open in IMG/M
3300006802\|Ga0070749_10646777	Not Available	568	Open in IMG/M
3300006802\|Ga0070749_10663307	Not Available	559	Open in IMG/M
3300006870\|Ga0075479_10241679	Not Available	718	Open in IMG/M
3300006916\|Ga0070750_10080969	Not Available	1523	Open in IMG/M
3300006916\|Ga0070750_10185306	Not Available	928	Open in IMG/M
3300006916\|Ga0070750_10263683	Not Available	745	Open in IMG/M
3300006916\|Ga0070750_10355633	Not Available	617	Open in IMG/M
3300006916\|Ga0070750_10459775	Not Available	525	Open in IMG/M
3300006919\|Ga0070746_10163358	All Organisms → Viruses → Predicted Viral	1078	Open in IMG/M
3300006919\|Ga0070746_10256711	Not Available	814	Open in IMG/M
3300006920\|Ga0070748_1284748	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	589	Open in IMG/M
3300007236\|Ga0075463_10068897	Not Available	1142	Open in IMG/M
3300007345\|Ga0070752_1284745	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	633	Open in IMG/M
3300007538\|Ga0099851_1073382	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1323	Open in IMG/M
3300007539\|Ga0099849_1187792	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	783	Open in IMG/M
3300007623\|Ga0102948_1123096	Not Available	795	Open in IMG/M
3300007778\|Ga0102954_1162085	Not Available	645	Open in IMG/M
3300009000\|Ga0102960_1003833	Not Available	5748	Open in IMG/M
3300009000\|Ga0102960_1012261	All Organisms → Viruses → Predicted Viral	3237	Open in IMG/M
3300009000\|Ga0102960_1154624	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	825	Open in IMG/M
3300009001\|Ga0102963_1010524	All Organisms → Viruses → Predicted Viral	3950	Open in IMG/M
3300009001\|Ga0102963_1020116	Not Available	2818	Open in IMG/M
3300009001\|Ga0102963_1134467	Not Available	1000	Open in IMG/M
3300009001\|Ga0102963_1139162	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	981	Open in IMG/M
3300009001\|Ga0102963_1166398	Not Available	885	Open in IMG/M
3300009027\|Ga0102957_1008241	All Organisms → Viruses → Predicted Viral	3558	Open in IMG/M
3300009508\|Ga0115567_10841325	Not Available	546	Open in IMG/M
3300012920\|Ga0160423_10183051	Not Available	1463	Open in IMG/M
3300012920\|Ga0160423_10632082	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	724	Open in IMG/M
3300012936\|Ga0163109_10150080	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1712	Open in IMG/M
3300016771\|Ga0182082_1236516	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	553	Open in IMG/M
3300017949\|Ga0181584_10249845	All Organisms → Viruses → Predicted Viral	1150	Open in IMG/M
3300017951\|Ga0181577_10412516	Not Available	857	Open in IMG/M
3300017952\|Ga0181583_10361102	Not Available	911	Open in IMG/M
3300017956\|Ga0181580_10050627	Not Available	3145	Open in IMG/M
3300017956\|Ga0181580_10874197	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	562	Open in IMG/M
3300017956\|Ga0181580_10928015	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	542	Open in IMG/M
3300017964\|Ga0181589_10673485	Not Available	651	Open in IMG/M
3300017967\|Ga0181590_10030702	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	4327	Open in IMG/M
3300017967\|Ga0181590_10042647	All Organisms → Viruses → Predicted Viral	3637	Open in IMG/M
3300017967\|Ga0181590_10521749	Not Available	824	Open in IMG/M
3300017967\|Ga0181590_10960052	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	559	Open in IMG/M
3300017967\|Ga0181590_11110108	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	510	Open in IMG/M
3300017969\|Ga0181585_10321453	All Organisms → Viruses → Predicted Viral	1072	Open in IMG/M
3300017969\|Ga0181585_10322603	All Organisms → Viruses → Predicted Viral	1070	Open in IMG/M
3300018418\|Ga0181567_10109578	All Organisms → Viruses → Predicted Viral	1920	Open in IMG/M
3300018420\|Ga0181563_10313921	Not Available	913	Open in IMG/M
3300018421\|Ga0181592_10024525	All Organisms → Viruses → Predicted Viral	4894	Open in IMG/M
3300018421\|Ga0181592_10063487	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED198	2925	Open in IMG/M
3300018421\|Ga0181592_10529430	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	810	Open in IMG/M
3300018421\|Ga0181592_10881475	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	583	Open in IMG/M
3300018421\|Ga0181592_11100694	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	507	Open in IMG/M
3300018424\|Ga0181591_10028609	All Organisms → Viruses → Predicted Viral	4759	Open in IMG/M
3300018424\|Ga0181591_10430155	Not Available	976	Open in IMG/M
3300018424\|Ga0181591_10769613	Not Available	671	Open in IMG/M
3300018428\|Ga0181568_10042513	Not Available	3856	Open in IMG/M
3300018428\|Ga0181568_10178592	All Organisms → cellular organisms → Bacteria	1764	Open in IMG/M
3300019751\|Ga0194029_1064146	Not Available	618	Open in IMG/M
3300019751\|Ga0194029_1091612	Not Available	529	Open in IMG/M
3300019756\|Ga0194023_1074158	Not Available	683	Open in IMG/M
3300019765\|Ga0194024_1067476	Not Available	802	Open in IMG/M
3300019765\|Ga0194024_1099773	Not Available	663	Open in IMG/M
3300020403\|Ga0211532_10252645	Not Available	689	Open in IMG/M
3300021957\|Ga0222717_10011690	Not Available	6067	Open in IMG/M
3300021957\|Ga0222717_10240628	Not Available	1055	Open in IMG/M
3300021958\|Ga0222718_10016697	Not Available	5200	Open in IMG/M
3300021964\|Ga0222719_10111311	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1986	Open in IMG/M
3300022937\|Ga0255770_10117087	All Organisms → Viruses → Predicted Viral	1479	Open in IMG/M
3300023116\|Ga0255751_10077157	All Organisms → Viruses → Predicted Viral	2156	Open in IMG/M
3300023116\|Ga0255751_10495356	Not Available	579	Open in IMG/M
3300023180\|Ga0255768_10044883	Not Available	3331	Open in IMG/M
3300025151\|Ga0209645_1009527	All Organisms → Viruses → Predicted Viral	3963	Open in IMG/M
3300025151\|Ga0209645_1017458	All Organisms → Viruses → Predicted Viral	2774	Open in IMG/M
3300025759\|Ga0208899_1014127	All Organisms → Viruses → Predicted Viral	4262	Open in IMG/M
3300025769\|Ga0208767_1237761	Not Available	580	Open in IMG/M
3300025769\|Ga0208767_1241592	Not Available	572	Open in IMG/M
3300025810\|Ga0208543_1004388	All Organisms → Viruses → Predicted Viral	3681	Open in IMG/M
3300025810\|Ga0208543_1042082	Not Available	1136	Open in IMG/M
3300025810\|Ga0208543_1088451	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	744	Open in IMG/M
3300025810\|Ga0208543_1116596	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	633	Open in IMG/M
3300025889\|Ga0208644_1377977	Not Available	529	Open in IMG/M
3300026138\|Ga0209951_1036311	All Organisms → Viruses → Predicted Viral	1076	Open in IMG/M
3300026138\|Ga0209951_1052524	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	872	Open in IMG/M
3300026183\|Ga0209932_1068975	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	822	Open in IMG/M
3300026187\|Ga0209929_1162248	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	539	Open in IMG/M
3300029318\|Ga0185543_1005788	All Organisms → Viruses → Predicted Viral	3241	Open in IMG/M
3300029319\|Ga0183748_1045368	Not Available	1286	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	79.21%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	15.84%
Freshwater	Environmental → Aquatic → Freshwater	4.95%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	32.67%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	31.68%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	15.84%
Unclassified	Environmental → Aquatic → Marine → Unclassified	6.93%
Oceanic	Environmental → Aquatic → Marine → Oceanic	5.94%
River	Environmental → Aquatic → Freshwater → River	4.95%
Pelagic	Environmental → Aquatic → Marine → Pelagic	0.99%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	32.67%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	30.69%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	15.84%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	6.93%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	4.95%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	2.97%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	2.97%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.99%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	0.99%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	32.67%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	30.69%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	12.87%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	4.95%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	3.96%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	2.97%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	2.97%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	2.97%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	1.98%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.99%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	0.99%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	0.99%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300001965	Marine microbial communities from Coastal Floreana, Equador - GS028	Environmental	Open in IMG/M
3300002483	Marine viral communities from the Pacific Ocean - ETNP_6_30	Environmental	Open in IMG/M
3300005611	Saline surface water microbial communities from Etoliko Lagoon, Greece	Environmental	Open in IMG/M
3300006026	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA	Environmental	Open in IMG/M
3300006027	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA	Environmental	Open in IMG/M
3300006404	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006870	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA	Environmental	Open in IMG/M
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300006920	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12	Environmental	Open in IMG/M
3300007236	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA	Environmental	Open in IMG/M
3300007345	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental	Open in IMG/M
3300007623	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MG	Environmental	Open in IMG/M
3300007778	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG	Environmental	Open in IMG/M
3300009000	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG	Environmental	Open in IMG/M
3300009001	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG	Environmental	Open in IMG/M
3300009027	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG	Environmental	Open in IMG/M
3300009508	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental	Open in IMG/M
3300016771	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071412BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017951	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017952	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017956	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017964	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017967	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017969	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018418	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018420	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018424	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018428	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019751	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG	Environmental	Open in IMG/M
3300019756	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MG	Environmental	Open in IMG/M
3300019765	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG	Environmental	Open in IMG/M
3300020403	Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300022937	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG	Environmental	Open in IMG/M
3300023116	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG	Environmental	Open in IMG/M
3300023180	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG	Environmental	Open in IMG/M
3300025151	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)	Environmental	Open in IMG/M
3300025759	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)	Environmental	Open in IMG/M
3300025769	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)	Environmental	Open in IMG/M
3300025810	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025889	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)	Environmental	Open in IMG/M
3300026138	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300026183	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300026187	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300029318	Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289	Environmental	Open in IMG/M
3300029319	Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOWin2010_100176727	3300000117	Marine	MTLAGWIMIVFWVGFLMFGIISWALNKTFRQIQDIEMDLDEEDIRNIM*
GOS2243_10822235	3300001965	Marine	MTLAGWIMIVFWLGFLMYGVVSWAINKTFVQLKDIETIELDELDRDNIN*
JGI25132J35274_10043605	3300002483	Marine	MTLAGYIMIMFWVGFLLYGVATWAINRTFVQLRDIEKIELDELDRDNIN*
Ga0074647_10068612	3300005611	Saline Water And Sediment	MTLAGWIMIVFWIGFLLFGIVSWALSKTFGQIKDIELDLDEEDIRNIM*
Ga0075478_100280405	3300006026	Aqueous	MTFAGWVMILFWLGFLMFGIVSWAINRTFVQLQDIEKIELDELDRDNIN*
Ga0075462_100197405	3300006027	Aqueous	MTFAGWVMILFWLGFLMFGIVSWAINRTFVQLQDIERIELDELDRDNIN*
Ga0075515_100069232	3300006404	Aqueous	MTFAGWVMMVFWLGFLLFGIVSWAINRTFVQLQDIERIELDELDRDNIN*
Ga0070749_102922764	3300006802	Aqueous	MNLAGWIMIVFWVGFLMYGIVVWALNKTFVQLQDIERIELDELDRDNIN*
Ga0070749_102990571	3300006802	Aqueous	MTLAGWIMIVFWIGFLLFGIVSWALNKTFRQIQDIELDLDEEDIRNIM*
Ga0070749_103200361	3300006802	Aqueous	MTLAGWIMIVFWVGFLMFGIISWALNKTFRQIQDIELEMDEEDVRNVM
Ga0070749_103249791	3300006802	Aqueous	MTLAGWIMIVFWVGFLLFGVVSWALNKTFRQIQDIEMDLDEEDIRNIM*
Ga0070749_105059031	3300006802	Aqueous	KMTLAGWIMIVFWIGFLLFGIVSWALNKTFRQIQDIEMDLDEEDIRNIM*
Ga0070749_105255862	3300006802	Aqueous	MTLAGWIMIVFWVGFLLFGVVSWALNKTFRQIQDIE
Ga0070749_105627301	3300006802	Aqueous	MTLVGWVMIVFWIGFLMFGMVSWAINKTFVQLQDIERIELDELDRDNIN*
Ga0070749_106467772	3300006802	Aqueous	MTLVGWVVIMFWIGFLMFGMVSWAVNKTFRQLQDIELIELDELDRDNIN*
Ga0070749_106633071	3300006802	Aqueous	KMTLVGWVVIMFWVGFLMFGMVSWALNKTFRQLQDIELIELDELDRDNIN*
Ga0075479_102416792	3300006870	Aqueous	MTLVGWVVIMFWIGFLMFGMVSWALNKTFRQLQDIELIELDELDRDNIN*
Ga0070750_100809691	3300006916	Aqueous	GWIMIVFWIGFLLFGIVSWALSKTFGQIQDIELDELDKDNIQ*
Ga0070750_101853064	3300006916	Aqueous	MTLAGWIMIVFWIGFLLFGIVSWALSKTFGQIQDIELDLDEEDIRNIM*
Ga0070750_102636832	3300006916	Aqueous	MTLVGWVVIMFWIGFLMFGMVSWAINKTFVQLQDIERIELDELDRDNIN*
Ga0070750_103556333	3300006916	Aqueous	MTLAGWIMIVFWVGFLMFGIISWALNKTFKQIQDIEMDLDEEDIRNIM*
Ga0070750_104597752	3300006916	Aqueous	MTLAGWIMIVFWVGFLLFGVVSWAINRTFQQLQDIERIELDELDRDNIN*
Ga0070746_101633581	3300006919	Aqueous	MTLAGWIMIVFWIGFLLFGIVSWALSKTFGQIQDIELDELDKDNII*
Ga0070746_102567111	3300006919	Aqueous	MTLVGWVVIMFWVGFLMFGMVSWALNKTFRQLQDIELIELDELDRDNIN*
Ga0070748_12847481	3300006920	Aqueous	QERRIKMTFAGWVMMVFWVGFLLFGIVSWAINRTFRQLQDIERIELDELDRDNIN*
Ga0075463_100688972	3300007236	Aqueous	LVGWVVIMFWIGFLMFGMVSWAVNKTFRQLQDIELIELDELDRDNIN*
Ga0070752_12847451	3300007345	Aqueous	KMTFAGWIMMVFWVGFLLFGIVSWAINRTFVQLQDIEKIELDELDRDNIN*
Ga0099851_10733822	3300007538	Aqueous	MTFAGWVMILFWLGFLMFGIVSWAINRTFRQLQDIEKIELDELDRDNIN*
Ga0099849_11877922	3300007539	Aqueous	MTFAGWVMMVFWVGFLLYGIVSWAINRTFRQLQDIERIELDELDRDNIN*
Ga0102948_11230961	3300007623	Water	MTLAGWIMITFWLGFLIYGVVVWALNKTFVQLNDIEKIEMDEFDRDNIN*
Ga0102954_11620852	3300007778	Water	MTFAGWVMIAFWLGFLLYGVVAWALNKSFEQLQDIENIELDELDRDNVG*
Ga0102960_10038336	3300009000	Pond Water	MTFAGWVMIAFWLGFLLYGVVAWALNKSFEQLQDIEMKLDEQDKDNII*
Ga0102960_10122612	3300009000	Pond Water	MTFAGWVMIGFWLGFLMYGVASWALNKSFEQLQDIENIELDELDRDNVG*
Ga0102960_11546243	3300009000	Pond Water	MTFAGWVMILFWVGFLMYGIVVWALSKTFQQLQDIEKIELDELDRDNIN*
Ga0102963_10105249	3300009001	Pond Water	MILVDVVLILFWSGFLLYGVMVWALNKSFEQLHNIELDEIDRDNIN*
Ga0102963_10201164	3300009001	Pond Water	MTFAGWVMIGFWLGFLMYGVVSWAINKTFKQLNDIEKIEMDELDRDNVG*
Ga0102963_11344673	3300009001	Pond Water	MTFAGWIMITFWVGFLIYGVVVWALNKSFEQLNDIENIEMDEFDRDNVN*
Ga0102963_11391622	3300009001	Pond Water	MTFAGWVMIVFWLGFLLYGVVMWVLNKSFEQLQDIEKIELDEIDNDNIN*
Ga0102963_11663983	3300009001	Pond Water	MTLAGWVMILFWVGFLMYGIVVWALSKTFQQLQDIEKIELDELDRDN
Ga0102957_10082416	3300009027	Pond Water	MTFAGWIMITFWVGFLIYGVVVWALNKTFVQLNDIEKIEMDEFDRDNIN*
Ga0115567_108413252	3300009508	Pelagic Marine	MTLVGWVMIVFWVGFLLMGIVSWAVNKTFSQLKDIDKIEL
Ga0160423_101830513	3300012920	Surface Seawater	MTLAGYIMIMFWVGFLLYGMASWAINKTFQQLNIDKIELDELDRDNIN*
Ga0160423_106320822	3300012920	Surface Seawater	MTLAGWIMISFWLGFLMYGVATWAINRTFVQLKDIERIELDELDRDNIN*
Ga0163109_101500802	3300012936	Surface Seawater	MTLAGWIMISSWLGFLMYGVATWAIHRTFVQLKDIERIELDELDRDNIN*
Ga0182082_12365161	3300016771	Salt Marsh	WSNRCDAFKIEKRRKKMTLAGWIMISFWVGFLLYGVVSWAINRTFVQLQDIDKIELDELDRDNIN
Ga0181584_102498452	3300017949	Salt Marsh	MTLAGWIMISFWVGFLLYGVASWAINRTFVQLQDIDKIELDELDRDNIN
Ga0181577_104125163	3300017951	Salt Marsh	MTLAGWIMIVFWVGFLLFGIVSWAINRTFRQLQDIERIELDELDRDNIN
Ga0181583_103611023	3300017952	Salt Marsh	MTLAGWIMISFWVGFLLYGVVSWAINRTFVQLQDIENIELDELDRDNIN
Ga0181580_100506275	3300017956	Salt Marsh	VTFAGWVMISFWLGFLIYGVVVWALNKTFVQLQDIEKIELDEMDRDNIN
Ga0181580_108741971	3300017956	Salt Marsh	ILFWVGFLLYGVASWAINRTFVQLQDIENIELDELDRDNIN
Ga0181580_109280153	3300017956	Salt Marsh	SFWVGFLLYGVASWAINRTFVQLQDIDKIELDEIDRDNIN
Ga0181589_106734853	3300017964	Salt Marsh	MTLAGWIMISFWVGFLLYGVASWAINRTFVQLQDI
Ga0181590_100307025	3300017967	Salt Marsh	MTLAGYIMIMFWVGFLLYGVVSWALNKTFVQLQDIEKIELDEMDRDNIN
Ga0181590_100426477	3300017967	Salt Marsh	MNLAGWIMIVFWVGFLLFGIISWALNKTFKQIQDIESIELDELDRDNII
Ga0181590_105217492	3300017967	Salt Marsh	VTSAGWVMISFRLGFLIYGVVVWALNKTFVQLQDIEKIELDELDRDNIN
Ga0181590_109600522	3300017967	Salt Marsh	GWIMISFWVGFLLYGVVSWAINRTFVQLQDIDKIELDELDRDNIN
Ga0181590_111101082	3300017967	Salt Marsh	WVMILFWVGFLLYGVASWAINRTFVQLQDIENIELDELDRDNIN
Ga0181585_103214532	3300017969	Salt Marsh	MIMFWVGFLLYGVVSWALNKTFVQLQDIEKIELDEMDRDNIN
Ga0181585_103226033	3300017969	Salt Marsh	MTLAGWIMISFWVGFLLYGVVSWAINRTFVQLQDIDKIELDELDRDNIN
Ga0181567_101095785	3300018418	Salt Marsh	MTLAGYIMIMFWVGFLLYGVVSWAINKTFSQLSDDIEMIELDEIDRDNI
Ga0181563_103139211	3300018420	Salt Marsh	MTLAGYIMIMFWVGFLLYGVVSWALNKTFVQLQDIEKIELDEIDRDNIN
Ga0181592_100245258	3300018421	Salt Marsh	VTFAGWVMISFWLGFLIYGVVVWALNKTFVQLQDIEKIELDELDRDNIN
Ga0181592_100634871	3300018421	Salt Marsh	MTLACWIMMVFWVGFLLFGIVSWAMNKTFGQIQDIESIELDELDRDNII
Ga0181592_105294302	3300018421	Salt Marsh	MTLAGWIMISFWVGFLLYGVVSWAINRTFVQLQDIDKIELEELDRDNIN
Ga0181592_108814751	3300018421	Salt Marsh	QERKIKMTLAGWIMISFWVGFLLYGVVSWAINRTFVQLQDIENIELDELDRDNIN
Ga0181592_111006942	3300018421	Salt Marsh	MTLAGWIMISFWVGFLLYGVVSWAINRTFVQLQDIDKIELDEIDRDNIN
Ga0181591_100286091	3300018424	Salt Marsh	RGEYKMNLAGWIMISFWVGFLLFGIATWALNKTFRQIQDIEMDLDEEDIRNIM
Ga0181591_104301552	3300018424	Salt Marsh	MTLAGWIMIVFWVGFLLFGIVSWAINRTFRQLQDIERIELDEIDRDNIN
Ga0181591_107696131	3300018424	Salt Marsh	MTFAGWVMISFWLGFLIYGVVVWALNKTFVQLQDIEKIELDELDRDNIN
Ga0181568_100425137	3300018428	Salt Marsh	MTFAGWVMISFWLGFLIYGVVVWALNKTFVQLQDIEKIELDEMDRDNIN
Ga0181568_101785924	3300018428	Salt Marsh	MTLAGWIMISFWVGFLLYGVVSWAINRTFVQLQDIEKIELDEID
Ga0194029_10641462	3300019751	Freshwater	MTLVGWVMIVFWIGFLMFGMVSWAINKTFVQLQDIELIELDELDRDNIN
Ga0194029_10916122	3300019751	Freshwater	MTFAGWVMILFWLGFLMFGIVSWAINRTFVQLQDIEKIELDELDRDNIN
Ga0194023_10741581	3300019756	Freshwater	MTLVGWVVIMFWVGFLMFGMVSWAVNKTFRQLQDIELIELDELDRDNIN
Ga0194024_10674762	3300019765	Freshwater	MTLAGWIMIVFWVGFLLFGVVSWALNKTFRQIQDIEMDLDEEDIDFP
Ga0194024_10997732	3300019765	Freshwater	MTFAGWVMMVFWVGFLLFGIVSWAINRTFRQLQDIERIELDELDRDNIN
Ga0211532_102526452	3300020403	Marine	MTLAGYIMIMFWVGFLLYGIVSWAINKTFKQLEIERIELDELDRDNIN
Ga0222717_1001169013	3300021957	Estuarine Water	MTFAGWVMIAFWLGFLLYGVVAWALNKSFEQLQDIEMKLDEQDKDNII
Ga0222717_102406281	3300021957	Estuarine Water	MILVDVVLILFWSGFLLYGVMVWALNKSFEQLHNIELDEIDRDNIN
Ga0222718_100166972	3300021958	Estuarine Water	MTFAGWVMIGFWLGFLMYGVASWALNKSFEQLQDIENIELDELDRDNVG
Ga0222719_101113112	3300021964	Estuarine Water	MTFAGWVMIVFWLGFLLYGVVMWVLNKSFEQLQDIEKIELDEIDNDNIN
Ga0255770_101170871	3300022937	Salt Marsh	MTLAGWIMISFWVGFLLYGVVSWAINRTFVQLQDIDKIELD
Ga0255751_100771576	3300023116	Salt Marsh	MTLAGYIMIMFWVGFLLYGVVSWALNKTFVQLQDIEKIELDEMDRDNINXYGIREI
Ga0255751_104953561	3300023116	Salt Marsh	VGFLLYGVVSWALNKTFVQLQDIEKIELDEMDRDNIN
Ga0255768_100448831	3300023180	Salt Marsh	MIMFWVGFLLYGVVSWALNKTFVQLQDIEKIELDEIDRDNIN
Ga0209645_10095272	3300025151	Marine	MTLAGYIMIMFWVGFLLYGVATWAINRTFVQLRDIEKIELDELDRDNIN
Ga0209645_10174581	3300025151	Marine	MTLAGWIMISFWLGFLMYGVATWAINRTFVQLKDIEKIELDELDRDNIN
Ga0208899_101412714	3300025759	Aqueous	MTLAGWIMIVFWVGFLMFGIISWALNKTFRQIQDIEMDLDEEDIR
Ga0208767_12377611	3300025769	Aqueous	MTLAGWIMIVFWIGFLLFGIVSWALSKTFGQIQDIELDELDKDNIQ
Ga0208767_12415921	3300025769	Aqueous	MTLAGWIMIVFWIGFLLFGVVSWALNKTFRQIQDIEMD
Ga0208543_100438810	3300025810	Aqueous	MTLVGWVVIMFWIGFLMFGMVSWAVNKTFRQLQDIELIELDELDRDNIN
Ga0208543_10420822	3300025810	Aqueous	IMFWIGFLMFGMVSWAVNKTFRQLQDIELIELDELDRDNIN
Ga0208543_10884511	3300025810	Aqueous	MTFAGWVMILFWLGFLMFGIVSWAINRTFVQLQDIERIELD
Ga0208543_11165963	3300025810	Aqueous	SKKRGFQMTFAGWVMILFWLGFLMFGIVSWAINRTFVQLQDIEKIELDELDRDNIN
Ga0208644_13779771	3300025889	Aqueous	MTLAGWIMIVFWIGFLLFGIVSWAINRTFQQLQDIERIELDELDKDNII
Ga0209951_10363113	3300026138	Pond Water	MTFAGWVMIGFWLGFLMYGVASWALNKSFEQLQDIENIELD
Ga0209951_10525242	3300026138	Pond Water	MTFAGWVMILFWVGFLMYGIVVWALSKTFQQLQDIEKIELDELDRDNIN
Ga0209932_10689752	3300026183	Pond Water	MTLAGWVMILFWVGFLMYGIVVWALSKTFQQLQDIEKIELDELDRDNIN
Ga0209929_11622481	3300026187	Pond Water	EIQDDGKERLRIMTLAGWVMILFWVGFLMYGIVVWALSKTFQQLQDIEKIELDELDRDNI
Ga0185543_100578812	3300029318	Marine	MTLAGYFMMMFWVGFLLYGIVSWAINKTFSQLSRNIENIELDELDRDNIN
Ga0183748_10453682	3300029319	Marine	MTLAGYIMIMFWVGFLLYGIVSWAMNKTFQQLNIDRIELDEMDRDNIN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103294

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences