Scaffold Ga0209645_1012149

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1012149
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3433
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077331	Metagenome / Metatranscriptome	117	Y
F092048	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_101214911	F077331	GGAG	MDNETKHKIEGQTYSNNVIESMQDILDIKDDEERQEQVFNYGLSISKQTVINYLISWGGPSYRLQITFDEGQIIKVVPQYQDWFTEWTTIPTTSKQNTTILNFVYELGLEELI
Ga0209645_10121493	F092048	N/A	MFIINYMIKLDMPRECRHIVVAFNKSHRIFPSTYDVERFCKNNKLEIVGTESVMGSYIVTVKRADSYI