Scaffold Ga0209645_1006568

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1006568
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4934
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000724	Metagenome / Metatranscriptome	919	Y
F000896	Metagenome / Metatranscriptome	845	Y
F005266	Metagenome / Metatranscriptome	406	Y
F060981	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10065681	F060981	GGAGG	MVETMTADTKLRIADLERQKIELNSRIERLSYSGNHERMLELEQEVWEIEDTIRKLMP
Ga0209645_100656810	F005266	AGGAGG	MSVHIRYRFLEEKGDYLKDEDMTRGYTLVETDTEHPFHVVLKEFYKDFKGRGVQIFNIWRTPAGEANYRMEEEERRMWS
Ga0209645_10065683	F000896	GGAG	MTNKINLVINLSILALLIYLAVSVKQLQDKVFPDPNIMIPLMGYDNGKQELEYNIRQFLNNALEMAIQEQEK
Ga0209645_10065688	F000724	AGGAGG	MPKKEKVWTMGTSGPIGPWVWHVWVKDKKKPERMVAFDIQHIKDQLENRQMIKAKKLPEEKEPISNMMPLGPNGGNGISRPADYDAGFKILRAWVDQNGGPPESIRQKLRELYIDYDKGK