Scaffold Ga0209645

Basic Information
Taxon OID	3300025151 Open in IMG/M
Scaffold ID	Ga0209645_1001096 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025151 Open in IMG/M

Scaffold ID

Ga0209645_1001096 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13745
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (48.28%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13745

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (48.28%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-104.89

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007003	Metagenome / Metatranscriptome	360	Y
F040325	Metagenome / Metatranscriptome	162	Y
F047713	Metagenome	149	N
F056888	Metagenome / Metatranscriptome	137	N
F079216	Metagenome / Metatranscriptome	116	Y
F081895	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100109610	F079216	N/A	MTVCDNCGHGIILHGCVDGKGYCMEGNGDWCECTEKGKTYEEEILELQHERIMS
Ga0209645_100109612	F047713	AGGAG	MEIIGQGEVAALEILKDMFGRDFPEYYTQYKLSDMITEEYRETLSDRQLKETIDIVIFTGFQPLAIRIQDKHHASQRMATIDQIQKQILEWNGWKVIDVWYYECKELWKDKVNERSRMELEMALKESSID
Ga0209645_100109623	F056888	N/A	MNVSEVLDIDGSVEHSRKLEVGDKITIQGFKIKNVDEVGAEVAEISTTEGLRHSFGKTIIGQAKSDYWKDVVAKCVDKDAADGLDAYVVEREAEKTGRMMLCLSMFPPKN
Ga0209645_100109625	F007003	N/A	MIKFFTKNIDEKKYRDIIQRIIMINGHDGTNLSGYNAWKNFEETWELNIIPVTEQEDFKKYYEHLNVETSDGIAWGVTGVKVIYMFVNDVKNPFIIRQNVMPLGHELLHAIYQDAVGTFHITRRYDAPEGRAFSKGSAATVIVHDNWYGSKETIRVWIRWGVIWIPITIPFIPINKAKEIYKI
Ga0209645_100109626	F040325	N/A	MARRKIGNSHTTISVTWEDKELFRKFAKFVKTTRTGKLYESDSVLFNRMLMFFKESNPMGEVSNTTYPTKNQEPNQLR
Ga0209645_10010964	F081895	GAG	LYDKVKVFKRIKKLESILFMNINLETDEELENRHNKGELMHYLRALEKLMVEQK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209645_1001096

Overview

Ecosystem & Geography

Associated Families

Sequences