Scaffold Ga0209756_1033750

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1033750
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2706
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F028524	Metagenome / Metatranscriptome	191	Y
F067209	Metagenome	126	Y
F084852	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_10337502	F005620	AGGA	VTEEEVEVKHINTFKTFCKNNRLRLREAGDGLPVAKAIGKFKEDQFFCNFKDGTIGVYVTRETQRQFTYLHKKLTKLGCVATQLGDFEGAYDLEWMNIPPVARLLKIKKGAAKVKDPKWLRE
Ga0209756_10337503	F067209	GAG	MMDPLDEEAELSMTEWVTKFGDGKTRNETAELAAKFMFAMSYYHDRMRLHIMLHPLFFVAGFLAAFWAL
Ga0209756_10337506	F084852	GAGG	MRDLKRFEEDIQNILDKFQFVGETRRKIFSQLMEYASEQDQFNAEQQAGNPQKGSQND
Ga0209756_10337507	F028524	AGG	MTNTHNEFKATVKEFVNKLTTIENEMTMLRQDRSELFTEMKSKLDPRSFRAAVKIHNLQKSTPDQTSLSRILDVLETTE