Scaffold Ga0209756_1003071

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1003071
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13803
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F019158	Metagenome	231	Y
F025414	Metagenome	202	Y
F106118	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_100307111	F004771	N/A	MNRIKRGDLVRMKTHDTGLVGIVMGRYPKHATTGPIQIGIKWFKGSGSVDWEPESWLEVVSESR
Ga0209756_100307112	F025414	N/A	MEVGDLVRETFDGNIGIILAWESDGWLVSFPKHGMVFHMLPRLLEAIDESR
Ga0209756_100307113	F106118	GGAGG	MKVGDLVRCMMVDGRPVGLVVERFVFAVKPTNHTDIFYVLIPGYEDPFPIRTSQMELVNASR
Ga0209756_100307125	F019158	N/A	MKMTIVIDSEDTKGIQSALTITRLMHDKYVNAGTSHKESFGKIEFIKMLRKFIKESIEHLNDEESNQVRDIADMGNLRNAKRFADRMFRGER