Scaffold Ga0209634_1069188

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1069188
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1665
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006867	Metagenome / Metatranscriptome	363	Y
F022282	Metagenome	215	Y
F062169	Metagenome / Metatranscriptome	131	N
F105878	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10691884	F022282	GGAGG	MPKFYFRLDLGDLVNFKASRVTEDYMDDTMLTGIIVEQRYVFTADNRYKVRTGDQDYWVGEDKLTLISGTKNKT
Ga0209634_10691885	F062169	GGAG	MPVKEHIENILNAEGQGALDAWYDAIKEHPQDAMKIHDVVVDHLVENTFLY
Ga0209634_10691886	F006867	AGGAG	MLYGKELAKSIQKRCHIQPGMLIKSTAGTELGKLALVVGLSSACKFDRDYEGAEDHIFYRCEPFDGTPPFVDYVSNMEQIS
Ga0209634_10691887	F105878	GGAG	MKVGQIIKINKTGLASFTPAIRNKIEGEIGLVIQEKYDLSHKLDQDKLPERVKVYPSLVQFESLQNMNFLDMGAVMVFPDQAEIIN