Scaffold Ga0209634_1057105

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1057105
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1895
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001048	Metagenome / Metatranscriptome	793	Y
F020795	Metagenome / Metatranscriptome	222	Y
F051476	Metagenome / Metatranscriptome	144	N
F072760	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10571053	F001048	N/A	MKTKNVKGKNKPELRFKSKRQFFWRFSVLKKSGGEITVTDRTPEMDVKDYNRIELLVNKRVRWELGSEGYMKWDSNGVKDIPTLAKAYGIK
Ga0209634_10571054	F051476	GAG	MTYWKVKLIIKDKLHKAELFEKLSDARLWAMKEAKLAVSHTMFNKTDIVADITSHEFA
Ga0209634_10571056	F020795	GGA	MRSSTLEVLNEGELIFGTRTAGSYFVREYEDNIEMSGSFFKTEEEAKTHMETLNEK
Ga0209634_10571058	F072760	GAG	MELHTLRAVKITKNIFELQRVNTELQKFRQVVSILENRKSEL