Scaffold Ga0209634_1052720

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1052720
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1999
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017556	Metagenome / Metatranscriptome	240	Y
F062747	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10527204	F017556	N/A	MLYAKFKEGQVVSFPSAGAVGNRARKGGIITAVEKMYELKDENKRFYPNGTCRGDLTTQQNLSNGEFKGYAYRCKTIQPNGFAAEIVMVEGFKLKLTTEEKVLNSYTIYA
Ga0209634_10527205	F062747	N/A	MANTNKKSSGQGKTPQQYTDSTRLAWYGVVGMTLLVILLTLLGGCATTHETSKKCCKSKTISAE