Scaffold Ga0209634_1042319

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1042319
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2310
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002374	Metagenome / Metatranscriptome	566	Y
F004882	Metagenome / Metatranscriptome	420	N
F058285	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10423191	F058285	AGGAG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTTSTADTFLNVSVNNAEFSKDVSVPALNAGQPFGVLNGSYVNND
Ga0209634_10423193	F002374	N/A	MDQILLYVSLIVASVSFFLCVYACTRVGKILNSVKGLEWDTIATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAVKQQNNVTDIKKNNFGG
Ga0209634_10423195	F004882	N/A	TADTFLNVSVNNAEFSKDVSVPALNAGQPFGVLNGSYVNNDLITTGAQRNRVLVRFTNDTSGTRTIRCGVFIGG