Scaffold Ga0209634_1040087

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1040087
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2394
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F046006	Metagenome	152	N
F053545	Metagenome	141	Y
F090883	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10400871	F053545	N/A	EIITHMGQRISTHNGYVMLPIEDTRKNIEGGRESKIKWSGETLPEVGKE
Ga0209634_10400873	F090883	GGAGG	MVTIAGKMKRINNCRDMLTKATCPRMQAMWKRNYEKLLKDYWEEAGERILKAAGEIH
Ga0209634_10400874	F046006	GGAGG	VKEYLKPLAKYINFIWLLIIIHFCITVIVVNFRYLDRLNNTIDTMWHEIEQVKDTNIKLYQFIEEHDNDFK
Ga0209634_10400875	F000720	AGGAG	MILNKEDTIVRAKIPDRMMSTTFTLPIDDRKVVGIVNYTADVNGVTPLAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKDLADTLSQDNIIGQMVNYFNKNIEDIITGVPIDKKQRMLSTDPYASQMKE