Scaffold Ga0209634_1035649

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1035649
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2585
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020603	Metagenome	223	Y
F028622	Metagenome	191	Y
F092711	Metagenome	107	N
F098057	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10356493	F092711	AGGAG	MVQLEVTLTGRSKTFTADTLQDCAKQFFDEYGEASKEVVKCHTFETNDPTQFMSIGGNESCLAWLKQMQQGTIDDK
Ga0209634_10356494	F020603	AGGA	MINKLLIIIFCLFLTNCSTYKPLINPETSKDKHNGDVIAGNYWKDLQACRYIHSQNTGIIVKTLRISDQTVFVKKCMEDYGYSILR
Ga0209634_10356495	F028622	N/A	MQDEDKTYENEVNHSIKDDRGSLDLTRQLDELNNKVKNLEGLEKIHKQTNGDLRIHILKLDKEIYQLKRDMAFQKENHQMDIMEKDNEIGRLIKKITEK
Ga0209634_10356499	F098057	AGGAG	MTLDQMVKLQSIVDKRAIRCDTLEFLNQTRYSHSKKTNIRFGDMHIDHFLTVVSNGFVNINNDSSQEDKTKEMFESIKKKILQEFANGNH