Scaffold Ga0209634_1014007

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1014007
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4685
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005129	Metagenome / Metatranscriptome	411	Y
F007892	Metagenome / Metatranscriptome	343	Y
F076593	Metagenome / Metatranscriptome	118	N
F092077	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_101400710	F076593	N/A	MALTEHQKNELSAVADSVAHYIEDHLRETINWQMPDSLVDELHEDQFMDAMGYAYEKVLQLITE
Ga0209634_101400713	F005129	N/A	MNYKVKIESRTLSINLMHHSTIDLGVFSAKATTHSFLFDGIKTQWGADINETELEYYVNGKRCKYVGFKELYTQLYGNSFNTWEADITRQIEEVVAKRIAKEYPGCDVNF
Ga0209634_101400714	F092077	N/A	MTEELSPLQRSFERINELIPHSHDVLLRCSLYEMCVELTNKSFAEGINTKY
Ga0209634_10140079	F007892	N/A	MGRLQEISPLQDVVNKINAKADFTHNINNTRLERYTVSTQNILKTANPSLFSKNTWQIVDDAFNSDHELFGGWLSEDDIYFLDYGLSVSNLKEAMKIAKFNKQLAIYDNVSQKVITVK