Scaffold Ga0209634_1008632

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1008632
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6290
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004162	Metagenome	450	Y
F007537	Metagenome / Metatranscriptome	349	Y
F022462	Metagenome / Metatranscriptome	214	Y
F062747	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100863210	F007537	N/A	MKKLLYLMVVGALFTSCQKDEFEIDRNYQFKMNGRTAQDINGYYHLKLDPTEDKQTLHRFGAHITNRDAYNLPSQVIWRCDAFWYTPDTLGHTYIEIGQVPTGESPWSWENFAVTGYGGMTVPIVNGTSNADPVTDSVYCMMAPIGAMIGDTVTIYGMALFEEGMIEKFDNIKVIFE
Ga0209634_10086326	F004162	N/A	MTPKKSFNKVEGLLSTRRKIEKEIEEIQNNCKHSSKSIKQVQERLGTPTLVTRYVCDECSLIIGIPNNDELQNFLKQ
Ga0209634_10086328	F062747	N/A	MANTNKKSQRQGKTPQQYTDSTRLAWYGVVGMTLLVILLTLLGGCATTHDTSKECCKTKKISTK
Ga0209634_10086329	F022462	N/A	MRKYIRALEIPIYLLVIALACLERGNKGIAIFLIIISVFRLVVNVITDETIYKK