Scaffold Ga0209634_1004640

Overview

Basic Information

• Taxon OID: 3300025138
• Scaffold ID: Ga0209634_1004640
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9034
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010460	Metagenome	303	Y
F071137	Metagenome	122	Y
F079203	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_10046402	F079203	GAG	MNISERLIKGDIQPSEQELKFLLWNALIQLSAYCDDVTSVEEESYNIEQMLSTLDVELGAHP
Ga0209634_10046404	F010460	AGGA	MDNTTIPTHAMIKNLTEYIVDGMTLPELKQFVYDDVYSIMLEDREVFYANLPVECEPEDFAKETD
Ga0209634_10046407	F071137	AGGA	MGSDFTLATFPYFDMTDDRRERFRELIVNLPASETDEFQDWYGLDDEESYNLEELLEDIESSCSIVGRETTTITTYNDKGERYELNVTGGMTWGDPPTDAYDAFNRASFFENVYNLAVDFSVEYSKMYT