Scaffold Ga0208299_1019679

Overview

Basic Information

• Taxon OID: 3300025133
• Scaffold ID: Ga0208299_1019679
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3025
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009536	Metagenome / Metatranscriptome	316	Y
F013896	Metagenome / Metatranscriptome	267	Y
F045144	Metagenome / Metatranscriptome	153	Y
F090868	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208299_10196791	F009536	N/A	MEKEVMKQALELMPGELKEEIKSNLENPKSYTRLFIKVLDEIDRMKVVLPKFTALKSSILKINKKNHSKITDEMKHYVPKTQSTLSAKDIEYWLQTAKKGDQLIYYTGGTFDRRSVKDESVFRKARNLAMEYDNTPFKNKKYHYRGSVRGEWGCTYKNIITLVQKRVAKEQRDKIWDEDKKKYVPGNIISYPIYNYIMIKQ
Ga0208299_10196792	F013896	N/A	MICDKCNGNGFTLVQGETIQCKKCLSSGEIKETITPPTYSDDDLTNIYQTLYEASLKLSGDNDPGMVAASLMAIGSRIYKTILTPEDYDKMMEKILETDVQPYKKETLQ
Ga0208299_10196794	F045144	AGGA	LTWQKGLYYHLHRTGKTIRKYPDGKDPLKQKLFGKTRICSKCGKRKSTLQFHWKTDYRYKNKVTKRLQKRCGLCRVQQDNEKYSASAEAYLRRRIGTLKANCHKHRGRRRVSLTSNQFYNAWERQRAATGLKCPISGETMTHTLGQGEVLTNISVDRINSEKNYALGNIQFVCLMANIMKNRYDNKNLLKWSKKIVNQLGGK
Ga0208299_10196796	F090868	N/A	MSLKETKKLYHKLVKQGVINEGIQMKEIKKMFKNTSFNNVSRYNAKKDLKKIHEKK