Basic Information | |
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Taxon OID | 3300025132 Open in IMG/M |
Scaffold ID | Ga0209232_1177923 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 662 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 18.92 | Long. (o) | -108.7999 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F033049 | Metagenome | 178 | Y |
F092189 | Metagenome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209232_11779231 | F033049 | N/A | SLTLKEVLPLINHPVVQAGSNFGSANNEVAPKQRGLMLKRGQALYVSVSGTAALTNGFYCNIQGGYY |
Ga0209232_11779232 | F092189 | N/A | MPFGIGKFNSSPKTNFDKGFSKNLDNGAFSIAESGGRSYKNSEIRFYNTDSLWSRWRRGYELYTFTQSMLGSTAGERQRRGDYRLYFTFQQFPGVFIPARLYTFPSTNQELGEHIVGMRDTDAFSFYDYGLPILGVRYLGDSVSATYSQS |
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