Scaffold Ga0209232_1028008

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1028008
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2170
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018267	Metagenome	236	Y
F037480	Metagenome	168	Y
F053549	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_102800811	F037480	GAGG	MQVGDLVHMPGSIEPATGIILRMKSDGEKHGLGRVEVYWIEDAEAAWEPKKWLEVISESR
Ga0209232_10280082	F053549	GGAG	MKVGDLVKWESVLNDSMDYYTKEYGVILKMSKTGHKTKSAQVLFTDGDTAWFDTQKLVVVSASR
Ga0209232_10280083	F018267	GGTGG	VRVGDLISFKPKSFGDDDWSNPCIVLDAFVNDDRRGGGYRDVIWIVWCDGYKHMVNPRNDDIMYLTSSSQLKA