Scaffold Ga0209232

Basic Information
Taxon OID	3300025132 Open in IMG/M
Scaffold ID	Ga0209232_1002824 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025132 Open in IMG/M

Scaffold ID

Ga0209232_1002824 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8468
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (95.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8468

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (95.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F012507	Metagenome	280	Y
F014672	Metagenome	261	Y
F016324	Metagenome	248	Y
F017285	Metagenome	241	Y
F093834	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100282411	F008590	GGAG	MQIGDLVTYWFQLPRWRKGLSVDVGVIVETGKYTGNRDVKVLWKGEMRTEGSQHLTLVDDISLTTQNSQKGDQS
Ga0209232_100282414	F014672	GAGG	MGKFKPGDLVRIKDGTNQDGIPDHRVGMIIEDGHTSERYSGPYTIVLLGTDLTLKFHEMFLEPFTTP
Ga0209232_100282417	F012507	AGGAGG	LSATWTDRLKVGDLLYSLRDDKPAILLDKEETARAKYGDIANKRWRFKLHIDGEQGWLDEVRLRTQYKLP
Ga0209232_100282418	F016324	GGAGG	VITLSKSLAGAMHRLARRPPLRPPRLGDLVRISGPGGIGRQYKRVHGVGIVTGIHKPEQQRKLYEVKWLKSEERMRFHEEDLIIVSDVDR
Ga0209232_10028242	F093834	AGGAGG	MEFIVFVATVFAVIFVIVAINEVAKEVRSLRSVFETQYQLERVPVKSENPYKRKGVEL
Ga0209232_100282420	F017285	N/A	HNKRKCPVLTEQICDKYKGNVLAAAKEREAGNENDAKWYDERAEVYRQQYIKRTKIDLATGKTVTNKAAKAERMKKVTCGYCQKRGHTRRTCQAVKVDKQIFIEETRRVRIAALESAREVGIGIGSMLPIRSTGYDKDGEWRRDILTMRYIQSALWDDCHANRPTLIVKHIDARKLGAANQSRYISRDNITKLVQANDTALRYAAAEGDDLPPSSLVPTLDPPKGWLQPTEQSLEKAITQVFPTKGNRHSIQRGYDYAYPSGTIREIIKDLGLTEHFPRENWS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209232_1002824

Overview

Ecosystem & Geography

Associated Families

Sequences