Scaffold Ga0209232_1001153

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1001153
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14670
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (75.47%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F018286	Metagenome	236	Y
F019158	Metagenome	231	Y
F031249	Metagenome	183	Y
F037480	Metagenome	168	Y
F054844	Metagenome	139	Y
F057352	Metagenome	136	Y
F074757	Metagenome	119	Y
F079212	Metagenome	116	Y
F105146	Metagenome	100	Y
F106118	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100115323	F018286	GGAG	MIETVLTTFILLGMVDSHDEHFATVELNTNPASNGGPATAVMPVNAFPCEIYEGKVFYIVKLHDNEDAVIICQEDAKSE
Ga0209232_100115324	F079212	AGGAGG	VSDYEKNLIDRCIESHYNMIRMHRRAIIELSRKTIKERELCEECFDFDIINARTGSRTGGSK
Ga0209232_100115332	F057352	GAGG	MKLWVLHGTYESELFTSIHLTEKGCALAAIADVMDFLSVSDEESALQVMNECYAYRDTDGEQTEAFEWDHDKMKEMSSKDLWKIFGDWTELCWERMSDRSYYIDATPQMVQA
Ga0209232_100115335	F074757	GGA	MKVGDLVTLSSYCLQSAPMWSWRQKIWFEKKPLVGLVVRVEDNPWKASKKFVSANEKVFYYIKWVQEGPGSRYGRTFHQTDGYFLRNDLKFVKKGDFKE
Ga0209232_100115339	F019158	AGGA	MKMTLVVDSSDREGLADALKMVRIMHQKYSGNHTAHKESFGKIEFIKLLRKFMRESIAHMENGEDGQVKDVKDLANLRNAKRFADRIFTGER
Ga0209232_100115341	F004771	N/A	MKSRVKIGDLVTMYTHDTGLIGVVLDREPKAISTTPAQICIKWFNTGGSVEWEPEGWLEVVSEAV
Ga0209232_100115345	F031249	AGGAG	MAKVGDLVRVRTKQYGEKLGVVIEVGKDGIRIKPQGHPRDILAAESDVKVLVSV
Ga0209232_100115346	F106118	N/A	MKVGDLVRCMTVDGKPVGLVVEEFRFAMKPTNETEIFYVLIPGYEDPFPIRTSQMELVNASR
Ga0209232_100115350	F037480	N/A	MQVGDLVTFPNSVAAPQTGIVLQTKPDGINRGTRHIRVKVYWIEDAESSWEPVKWLEVISRS
Ga0209232_100115351	F105146	GGA	MIEVGSIVRSKKAMFEHRARIGIVRQLRDGAFENQPLAQVYWPHSRTLDWVEAKDMEVVS
Ga0209232_100115352	F054844	GGAGG	VLKAGTLVGWRGSIGFVMGACKKRWAKPADVWVMWTDESKPRIECGLRLEVLNASR