Scaffold Ga0209232_1000944

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1000944
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16578
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (27.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025718	Metagenome	200	Y
F031064	Metagenome / Metatranscriptome	183	Y
F032304	Metagenome / Metatranscriptome	180	Y
F060426	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100094412	F025718	N/A	MIKNDKKVNGFIAKVNIVDRKTGDIVGRNQILRLDHHDSVDALNRDLAKFGLPRKFQFIKWVA
Ga0209232_100094421	F031064	AGGA	MQTKFKKGDVLISRDNKVFQFIQATKHDTLGTIAMVRPYRTNRKVGIRFEDVKLHPLFN
Ga0209232_100094423	F032304	N/A	MKHSESGTRKVLKQIKKCPDINEVRATANGYMILAKNGEQYLAHMSAKAFHPLRRWLKRNTRLQSLKF
Ga0209232_100094426	F060426	N/A	MINYDIPNSVSDYQASAPKSKLKGFDDLCFQTHPSFADGKARQARLKFGSRDQFEISVVQNLNDGNGLYGHIDDDTYEVAMWYDGRKTMLPLTLGDDVLAYQSPIDITRLMHQAHLNDFAWVTLLHNLRDDHRKDLDLDI