Scaffold Ga0209232_1000632

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1000632
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20897
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (7.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009300	Metagenome	320	Y
F018080	Metagenome	237	Y
F024889	Metagenome	204	Y
F089534	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100063224	F018080	N/A	MGYLDIEIFNHFLKVYTYIVWNKKHLLGEIVEDDIMNILDKQQLIDFYHIGKTKFKVEKSKIEKYIKRDDK
Ga0209232_100063228	F009300	N/A	MIKWKKTTYPSTFIKLSDELAKVRSMLSADVYNKKTEKYRGNQEHSISQLGIFAELIARHLMENNKGIRYKAAPLLEERPIVEADIIMEGIGELNYIDVKGVRSGGNALRVNFKAHNNPKKKITHYLFIQPLNALYARFCWFTHKQVSEWTVVMSTYTECYELEIQKNN
Ga0209232_100063231	F089534	N/A	MAKKRKLNSKNPKYKTDKGEELIVVKKVPLIGKAPGHGVWYKNEK
Ga0209232_100063233	F024889	N/A	MMNSVIIGSLMIIGVLILYIFALHYVEGKIARQQNESLEKNIDKLDDKA