Scaffold Ga0209232

Basic Information
Taxon OID	3300025132 Open in IMG/M
Scaffold ID	Ga0209232_1000287 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025132 Open in IMG/M

Scaffold ID

Ga0209232_1000287 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32417
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (80.95%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

32417

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (80.95%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040673	Metagenome / Metatranscriptome	161	Y
F051183	Metagenome / Metatranscriptome	144	N
F077329	Metagenome / Metatranscriptome	117	Y
F097161	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100028724	F077329	AGGAG	MIDRTMWFLYNRLGDNDRQAPSIDSISGMFFNYWKIMNVMDINTQTLSAIDIYNGLNTCYDKMAKSTAKNLYEYGEVPANADYRISYYEQEHEIYDTYACCTNLNEVLIEGGEPEFDDTEPFREALNEVAYENIEYEIESESFTLNDDAIEWYKTCHPGDDKLITYMYDTGKNLDWEDIEEFLGDKLDMVDHQNADMHITQIRKFMLDRLANQNVNIIDGLEQTENGMKEVNPETGELQD
Ga0209232_100028727	F040673	AGGAG	MSLVPKDMDDMWVCDYCGSEEVQTRAWIIINTEQVMDTLDDIYWCDNCKDEVNAITYFEFKEKIAEECGGNKDKYDEIMDGSRM
Ga0209232_100028728	F097161	N/A	MEKIDAKIEIDVYYSFDEETGYYLDADSIRSDFEQALDDVEANVSHLNHERDDHLRTKHMEFPERETDGAEL
Ga0209232_100028733	F051183	AGGAG	MAITGTKVKTNTSNKNWFVNQCRIVEAEQIDSQYNDCSIRLKLEDKDNGYNYTTFINQNFEKDVNGIVTGMAFPEDLNTLYLASGKDINVSDVGEVNVDTLIDGEVAVINYAASGKYKRATWGVVSNPNDTDELEKKFMAQIAKGYPKNYQNPKETMVEEMLGNREPAQKTETVDDLPF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209232_1000287

Overview

Ecosystem & Geography

Associated Families

Sequences