Scaffold Ga0209128_1000058

Overview

Basic Information

• Taxon OID: 3300025131
• Scaffold ID: Ga0209128_1000058
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67354
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (33.70%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045198	Metagenome / Metatranscriptome	153	Y
F045797	Metagenome / Metatranscriptome	152	Y
F098234	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209128_100005873	F098234	N/A	MNREQLENRVKELTVLIEESSNGVKNLVAEQAAFTKRLDDLSKPKLSPAQFDEIHLMIEGACECFDICPDDCDIELELDWDNKVRVNEFDWSRSKEDLVQHIMDRMEEIFAVAEDKE
Ga0209128_100005876	F045198	GAG	MKLEAEHIEQIASYMADSLEDHLDVVFWDGIARVLDEFSIDYEDIGDISDEDCEAIVNYTRLMFAPKADLGL
Ga0209128_100005887	F045797	N/A	MRILKTVKEDNSIRLEQEYAGVTVMTRWRPYTVGDLPKNFGCIEYETDVEGIEEWFNYKGLTYVRDER