Scaffold Ga0208919_1034303

Overview

Basic Information

• Taxon OID: 3300025128
• Scaffold ID: Ga0208919_1034303
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1820
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049037	Metagenome / Metatranscriptome	147	N
F049924	Metagenome / Metatranscriptome	146	N
F060975	Metagenome / Metatranscriptome	132	N
F097503	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_10343032	F097503	AGGAG	MDGHTRTEMDCTTEAVVLFEDVVDVFEHRMIEGCIANEFKCTYNAEKGEFVAEINGKFYVAMTREKR
Ga0208919_10343033	F060975	AGGAG	MGKTIRRNPVARNSEQFNKPKTIRDRKKDFYRPDSKREFEEAIEDMGFDEHNRKDAIITQYQDDLARSQEDGWPYED
Ga0208919_10343034	F049037	GGAG	MSESPCDTCHNYWLCMEGSRACSDFKLFYDTGKITHHDRSPNWYIDMPPHTITVRELSERCGFGKETNKLKHWLGLRVFPLIEDPLGFYFLRHIDGAIENTYTGKSSKRLRYAKAACSEVVLEAKVRESTARAQNNVGRVVQREMGRNVAALRGDEDQGEN
Ga0208919_10343035	F049924	GAG	MRKYATQRLIAKDVPVHLKGLFEGQNLRFRGRGSRKRAVDIVMNSKKLINKYGTNGLLARFNQDLPLEFADRMSVYSR