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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025128 Open in IMG/M |
| Scaffold ID | Ga0208919_1001385 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14061 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (82.61%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -13.003 | Long. (o) | -80.809 | Alt. (m) | Depth (m) | 90 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F024655 | Metagenome / Metatranscriptome | 205 | Y |
| F030879 | Metagenome / Metatranscriptome | 184 | Y |
| F036431 | Metagenome / Metatranscriptome | 170 | N |
| F041813 | Metagenome | 159 | N |
| F074030 | Metagenome / Metatranscriptome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208919_100138517 | F036431 | GAG | MARRIDTRTNRTMVAVEMYGMDDFLRQLRFAPSETKKEIGKGNKAIAEKVAVEMKQRARIIWSAQQYETIVPSLRAVQGTVPKVKIGGARKAAVSRRKNRPSAGEFVMGAEFGGRNQKTTLQFPMSRRGGYVLFPTIRRLHGFIKREYTDNIEKALRKVAR |
| Ga0208919_100138518 | F024655 | GAGG | MKNSMKISLRIVHDGAERLLVAGPAAIVAFERHWSLGIGKAMSEVRVEHLAWLAHRAAWQEAQAGNGPAVKPFDTWLDLLDDIEAVGDEDDAVPLDGTP |
| Ga0208919_10013852 | F041813 | GGCGG | MNRFTVVHTAELAAVTDDLSWQARGLFLELLLAADYATGMVPATSREQVRVWTGRSWSATANHLDELGKAGLIVESAAGIEVTVYPQISDPRGNREALRAHREQLALTAKSLAPTAKPTSENADTITSYKTTTDGHRYIPGEGWV |
| Ga0208919_100138520 | F030879 | GGAGG | MPKKKHEYTVVGNHAVAGHEPGETFSSDMPDEQAQQLIDGGHLTAGKRPEEG |
| Ga0208919_10013859 | F074030 | AGG | MSKMTKLIAAVTGLLVAVGTLVGTISMTIGKGPEPASGGITIVLNSAEAFADFIDNHPSS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |