Scaffold Ga0209348_1009917

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1009917
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3843
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028800	Metagenome / Metatranscriptome	190	Y
F060424	Metagenome	133	Y
F072335	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10099177	F072335	GGAGG	MRLNGGLLASHWQDEWILLKRKWNMMHPHERGKWEDYYDANRK
Ga0209348_10099178	F028800	N/A	MYKIEIEDGYDGFERHVTGNIDLDGNNVYEWELDTYDGFTSIYLIDCEVRINLEDEDDLKLFNIDEEVGIEIYDEILDFVNDNGYDFIGEDFE
Ga0209348_10099179	F060424	N/A	MKRKDILAKIEETYNNIYAFTDRLGDEALEVLDEYVTNYNLDDEYSILIEALCDDYDPTNLSKDTLSYLLDAHKEALSDLRCE