Scaffold Ga0209348_1009434

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1009434
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3966
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028800	Metagenome / Metatranscriptome	190	Y
F060424	Metagenome	133	Y
F072335	Metagenome / Metatranscriptome	121	Y
F078595	Metagenome	116	N
F092752	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100943410	F092752	AGGAG	MDYTSYYAMTAAKRNSSSLEEEMNKRGYIKDYYIGAGAWHWKKV
Ga0209348_100943412	F072335	N/A	MRMNGGLQASWQDEWILLKRKWNNLKLMHPNLKIEWEDYYNENRK
Ga0209348_10094347	F078595	N/A	MKNKINENIFVVSDFEIVENKYFGINTGYLIRQFLELFSSDPDNMSNSKYISKFNNFLNEIKSKYICLNKLSVNDEGEITWVIKKVY
Ga0209348_10094348	F060424	GAG	MTRANLLSKIEETFNKIYQFTDRMGDEALNVLDEYVTKYNLDNEYTICLEAQIDEYDPTNLSKDTLSYLLDAHLDALADLRCE
Ga0209348_10094349	F028800	N/A	MYKIEIEDGYDGFERHVTGNIDLDGNNVYEWELDTYDGLTSIYLIDCEVRINLEDEDDLNLFNIDEEVGIEIYDEILDFVNDNGYSFIGEEFE