Scaffold Ga0209348_1000558

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000558
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19127
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (21.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089561	Metagenome / Metatranscriptome	109	Y
F098264	Metagenome / Metatranscriptome	104	Y
F106117	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100055811	F098264	N/A	MNSKNYEELIYYVLDHFTKGGTPLPALIGNKLEWQVTTLVAGLLANEHVSSSLDATDIVDAAINYVNIIQERLGHYENAKVNSLEHLLDK
Ga0209348_100055816	F106117	N/A	MLSFDSSPEEEFWKVKMTRYIEDCSSVDELKQIATMLVKLAATRQCVIKGLVKDSLDRMESELRISSM
Ga0209348_100055820	F089561	N/A	VSYLITTYLKGIPHAITPDTEKNCFSLIPITTDSQISKAFCSPTKTGAVNILNWINENDAKLGKQNLSVEPEARFFC