NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F106117

Metagenome Family F106117

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F106117
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 67 residues
Representative Sequence MLTFDSSPEEEFWKVKMERYIADCSSVSELREVATLLVKIAATRQTVIKGLVKDALDQMESQLGISS
Number of Associated Samples 69
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 16.00 %
% of genes from short scaffolds (< 2000 bps) 50.00 %
Associated GOLD sequencing projects 59
AlphaFold2 3D model prediction Yes
3D model pTM-score0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (48.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(37.000 % of family members)
Environment Ontology (ENVO) Unclassified
(67.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(81.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 56.84%    β-sheet: 0.00%    Coil/Unstructured: 43.16%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00436SSB 10.00
PF00476DNA_pol_A 9.00
PF02511Thy1 3.00
PF09250Prim-Pol 2.00
PF13884Peptidase_S74 2.00
PF02945Endonuclease_7 2.00
PF12847Methyltransf_18 1.00
PF08484Methyltransf_14 1.00
PF13392HNH_3 1.00
PF13489Methyltransf_23 1.00
PF13482RNase_H_2 1.00
PF13578Methyltransf_24 1.00
PF00210Ferritin 1.00
PF13649Methyltransf_25 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0629Single-stranded DNA-binding proteinReplication, recombination and repair [L] 10.00
COG2965Primosomal replication protein NReplication, recombination and repair [L] 10.00
COG0749DNA polymerase I, 3'-5' exonuclease and polymerase domainsReplication, recombination and repair [L] 9.00
COG1351Thymidylate synthase ThyX, FAD-dependent familyNucleotide transport and metabolism [F] 3.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms52.00 %
UnclassifiedrootN/A48.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2189573026|GS311G0146KB_1112118695896Not Available813Open in IMG/M
3300000422|BB_Man_A_Liq_inBBDRAFT_1026810Not Available532Open in IMG/M
3300001450|JGI24006J15134_10000260All Organisms → Viruses35788Open in IMG/M
3300001973|GOS2217_10075274All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.882Open in IMG/M
3300002231|KVRMV2_100054436Not Available3609Open in IMG/M
3300002231|KVRMV2_100059485Not Available2894Open in IMG/M
3300002482|JGI25127J35165_1003819All Organisms → Viruses4047Open in IMG/M
3300005057|Ga0068511_1020705All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.955Open in IMG/M
3300005057|Ga0068511_1033777All Organisms → Viruses796Open in IMG/M
3300005346|Ga0074242_10915770All Organisms → Viruses4687Open in IMG/M
3300005512|Ga0074648_1007817All Organisms → Viruses7591Open in IMG/M
3300005613|Ga0074649_1002923All Organisms → Viruses17508Open in IMG/M
3300005613|Ga0074649_1004281Not Available13288Open in IMG/M
3300005821|Ga0078746_1000150Not Available12282Open in IMG/M
3300005823|Ga0078745_1119998Not Available743Open in IMG/M
3300006025|Ga0075474_10000501Not Available14991Open in IMG/M
3300006734|Ga0098073_1000453All Organisms → Viruses14167Open in IMG/M
3300006734|Ga0098073_1000620Not Available11493Open in IMG/M
3300006734|Ga0098073_1000860All Organisms → Viruses9378Open in IMG/M
3300006734|Ga0098073_1001138Not Available7833Open in IMG/M
3300006734|Ga0098073_1003870All Organisms → Viruses3268Open in IMG/M
3300006734|Ga0098073_1011599All Organisms → Viruses1470Open in IMG/M
3300006735|Ga0098038_1001095Not Available11822Open in IMG/M
3300006735|Ga0098038_1003525All Organisms → cellular organisms → Bacteria6529Open in IMG/M
3300006737|Ga0098037_1027991All Organisms → Viruses → Predicted Viral2084Open in IMG/M
3300006790|Ga0098074_1003129All Organisms → Viruses7029Open in IMG/M
3300006790|Ga0098074_1003355All Organisms → Viruses6704Open in IMG/M
3300006790|Ga0098074_1006991Not Available3995Open in IMG/M
3300006790|Ga0098074_1008521All Organisms → Viruses → Predicted Viral3502Open in IMG/M
3300006790|Ga0098074_1035047Not Available1447Open in IMG/M
3300006790|Ga0098074_1133658Not Available642Open in IMG/M
3300007117|Ga0101549_1096461All Organisms → Viruses562Open in IMG/M
3300007236|Ga0075463_10221831All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica608Open in IMG/M
3300007871|Ga0111032_1050396All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica2456Open in IMG/M
3300009529|Ga0114919_10303702Not Available1120Open in IMG/M
3300009529|Ga0114919_10390009All Organisms → Viruses969Open in IMG/M
3300009593|Ga0115011_10003494Not Available10697Open in IMG/M
3300011118|Ga0114922_10386610Not Available1162Open in IMG/M
3300012920|Ga0160423_10052851All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica2946Open in IMG/M
3300012920|Ga0160423_10696113Not Available686Open in IMG/M
3300012920|Ga0160423_11149817Not Available518Open in IMG/M
3300017708|Ga0181369_1005919Not Available3232Open in IMG/M
3300017714|Ga0181412_1073705All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica829Open in IMG/M
3300017717|Ga0181404_1162017All Organisms → Viruses538Open in IMG/M
3300017719|Ga0181390_1003306Not Available6435Open in IMG/M
3300017741|Ga0181421_1203721All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica506Open in IMG/M
3300017744|Ga0181397_1148708All Organisms → Viruses600Open in IMG/M
3300017771|Ga0181425_1247708All Organisms → Viruses551Open in IMG/M
3300017776|Ga0181394_1201666All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.606Open in IMG/M
3300017951|Ga0181577_10012704Not Available6261Open in IMG/M
3300017951|Ga0181577_10019735Not Available4950Open in IMG/M
3300017985|Ga0181576_10036321Not Available3383Open in IMG/M
3300017985|Ga0181576_10932101All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica507Open in IMG/M
3300018080|Ga0180433_11150282All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S04-C348564Open in IMG/M
3300018421|Ga0181592_10438875All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica914Open in IMG/M
3300020055|Ga0181575_10138200Not Available1477Open in IMG/M
3300020274|Ga0211658_1025740All Organisms → Viruses → Predicted Viral1306Open in IMG/M
3300020403|Ga0211532_10000027Not Available79212Open in IMG/M
3300020417|Ga0211528_10016080Not Available3900Open in IMG/M
3300020436|Ga0211708_10033761Not Available1953Open in IMG/M
3300020438|Ga0211576_10000117Not Available67369Open in IMG/M
3300020439|Ga0211558_10391411All Organisms → Viruses643Open in IMG/M
3300021364|Ga0213859_10025599Not Available2765Open in IMG/M
3300021364|Ga0213859_10118076All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica1255Open in IMG/M
3300021555|Ga0224711_1189591All Organisms → Viruses562Open in IMG/M
3300021964|Ga0222719_10540830All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica690Open in IMG/M
3300022069|Ga0212026_1005460All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica1486Open in IMG/M
3300022167|Ga0212020_1092053All Organisms → Viruses506Open in IMG/M
3300022168|Ga0212027_1002890All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica2167Open in IMG/M
3300022939|Ga0255754_10239504All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica890Open in IMG/M
(restricted) 3300023210|Ga0233412_10043297All Organisms → Viruses → Predicted Viral1821Open in IMG/M
(restricted) 3300024059|Ga0255040_10289807All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica683Open in IMG/M
3300024433|Ga0209986_10021054All Organisms → Viruses4413Open in IMG/M
3300024433|Ga0209986_10034686Not Available3170Open in IMG/M
3300025057|Ga0208018_100933Not Available6416Open in IMG/M
3300025057|Ga0208018_101371All Organisms → Viruses → Predicted Viral4971Open in IMG/M
3300025057|Ga0208018_103962Not Available2535Open in IMG/M
3300025057|Ga0208018_106157Not Available1892Open in IMG/M
3300025057|Ga0208018_122570Not Available725Open in IMG/M
3300025086|Ga0208157_1011337Not Available2940Open in IMG/M
3300025093|Ga0208794_1001001Not Available14341Open in IMG/M
3300025093|Ga0208794_1001167Not Available12365Open in IMG/M
3300025093|Ga0208794_1005032Not Available4008Open in IMG/M
3300025093|Ga0208794_1005981All Organisms → Viruses → Predicted Viral3522Open in IMG/M
3300025093|Ga0208794_1009312Not Available2496Open in IMG/M
3300025093|Ga0208794_1046693All Organisms → Viruses802Open in IMG/M
3300025101|Ga0208159_1044707Not Available941Open in IMG/M
3300025102|Ga0208666_1010042Not Available3283Open in IMG/M
3300025120|Ga0209535_1003617Not Available9812Open in IMG/M
3300025127|Ga0209348_1000558All Organisms → Viruses19127Open in IMG/M
3300025632|Ga0209194_1028099All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica1813Open in IMG/M
(restricted) 3300027868|Ga0255053_10557780All Organisms → Viruses554Open in IMG/M
3300027906|Ga0209404_10114884Not Available1606Open in IMG/M
3300029293|Ga0135211_1000569Not Available1971Open in IMG/M
3300029293|Ga0135211_1015556Not Available788Open in IMG/M
3300029301|Ga0135222_1001783All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica1297Open in IMG/M
3300029306|Ga0135212_1036649All Organisms → Viruses522Open in IMG/M
3300029308|Ga0135226_1020426All Organisms → Viruses617Open in IMG/M
3300029448|Ga0183755_1004348Not Available6833Open in IMG/M
3300032274|Ga0316203_1153424Not Available640Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine37.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater8.00%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh7.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine7.00%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface5.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous5.00%
Marine HarborEnvironmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor5.00%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater3.00%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment3.00%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment3.00%
Marine WaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water2.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.00%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater2.00%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment2.00%
Stylissa Sp. (Marine Sponge)Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Stylissa Sp. (Marine Sponge)2.00%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat1.00%
Marine EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine1.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine1.00%
Bioluminescent BayEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Bioluminescent Bay1.00%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment1.00%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2189573026Marine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-FOS-0p8-Deep1200EnvironmentalOpen in IMG/M
3300000422Marine sediment microbial community from La Parguera, Puerto Rico - BB Mangrove A SedimentEnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300001973Marine microbial communities from Bermuda, Atlantic Ocean - GS001EnvironmentalOpen in IMG/M
3300002231Marine sediment microbial communities from Santorini caldera mats, Greece - red matEnvironmentalOpen in IMG/M
3300002482Marine viral communities from the Pacific Ocean - ETNP_2_30EnvironmentalOpen in IMG/M
3300005057Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2umEnvironmentalOpen in IMG/M
3300005346Saline sediment microbial community from Etoliko Lagoon, GreeceEnvironmentalOpen in IMG/M
3300005512Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_waterEnvironmentalOpen in IMG/M
3300005613Saline sediment microbial communities from Etoliko Lagoon, Greece - sedimentEnvironmentalOpen in IMG/M
3300005821Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf, PM1EnvironmentalOpen in IMG/M
3300005823Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 75 cmbsf, MM2EnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006734Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaGEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006737Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaGEnvironmentalOpen in IMG/M
3300006790Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaGEnvironmentalOpen in IMG/M
3300007117Marine sponge Stylissa sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - st20isHost-AssociatedOpen in IMG/M
3300007236Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNAEnvironmentalOpen in IMG/M
3300007871Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 75 cmbsf. Combined Assembly of MM2PM2EnvironmentalOpen in IMG/M
3300009529Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaGEnvironmentalOpen in IMG/M
3300009593Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 MetagenomeEnvironmentalOpen in IMG/M
3300011118Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaGEnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300017708Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaGEnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017717Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25EnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017741Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19EnvironmentalOpen in IMG/M
3300017744Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23EnvironmentalOpen in IMG/M
3300017771Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017985Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018080Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaGEnvironmentalOpen in IMG/M
3300018421Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020055Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101411CT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020274Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943)EnvironmentalOpen in IMG/M
3300020403Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)EnvironmentalOpen in IMG/M
3300020417Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)EnvironmentalOpen in IMG/M
3300020436Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300020439Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)EnvironmentalOpen in IMG/M
3300021364Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304EnvironmentalOpen in IMG/M
3300021555Marine sponge Stylissa sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - st20is 200bp no Eukaryotes lastHost-AssociatedOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022069Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v2)EnvironmentalOpen in IMG/M
3300022167Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2)EnvironmentalOpen in IMG/M
3300022168Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v2)EnvironmentalOpen in IMG/M
3300022939Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaGEnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300024059 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2EnvironmentalOpen in IMG/M
3300024433Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025057Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025086Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025093Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025101Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025102Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025127Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025632Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)EnvironmentalOpen in IMG/M
3300027868 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_22EnvironmentalOpen in IMG/M
3300027906Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300029293Marine harbor viral communities from the Indian Ocean - SCH2EnvironmentalOpen in IMG/M
3300029301Marine harbor viral communities from the Indian Ocean - SRH1EnvironmentalOpen in IMG/M
3300029306Marine harbor viral communities from the Indian Ocean - SCH3EnvironmentalOpen in IMG/M
3300029308Marine harbor viral communities from the Indian Ocean - SRB2EnvironmentalOpen in IMG/M
3300029448Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082EnvironmentalOpen in IMG/M
3300032274Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GS311G0146KB_006812102189573026Marine EstuarineMSLTFETSPEEEFWKVKMERYIEGCDSVYELKQIATLLVKLAATRQCVIKGLVKDSLNRMESELRISS
BB_Man_A_Liq_inBBDRAFT_102681023300000422Bioluminescent BayMKEMTLTFQECPEEEFWKVKMERQIEDCKSIEELREMAKLLVRIAATRQVVIKGLVKDALDNMDHWQFSESEG*
JGI24006J15134_10000260333300001450MarineMSLTFETSPEEEFWKVKMERYIEGCDSVYELKQIATLLVKLAATRQCVIKGLVKDSLNRMESELRISS*
GOS2217_1007527423300001973MarineMLSFESCPEEEFWKVKMTRHIDSCSSVDELKQIATLLVKLAATRQCVIKGLVKDSLDQMHSELGIRPE*
KVRMV2_10005443623300002231Marine SedimentMLTFDSSPEEEFWKVKMERYIADCSSVSELREVATLLVKIAATRQTVIKGLVKDALDQMESQLGISS*
KVRMV2_10005948523300002231Marine SedimentMTLSFENSPEEEFWKVKMHREIDQCSSVEELRTMAKLLVSIAATRQVVIKGLIKDALDNMHHWQLSESEG*
JGI25127J35165_100381943300002482MarineMLSFDSSPEEEFWKVKMTRYIEDCSSVDELKQIATMLVKLAATRQCVIKGLVKDSLDRMESELRISSM*
Ga0068511_102070523300005057Marine WaterMLSFESCPEEEFWKVKMTRHIDSCSSVDELKQIATLLVKLAATRQCVIKGLVKDSLDQMHSKLGVRPE*
Ga0068511_103377723300005057Marine WaterMLKFEASPEEEFWKVKMERYIDECSSVDELKQIAKLLVNLSATRQVAIKALVKENLDQWESEMGIRTK*IFGCTCH*
Ga0074242_1091577073300005346Saline Water And SedimentMLSFESCPEEEFWKVKMTRHIDSCGSVDELKQIATLLVKLAATRQCVIKGLVKDSLDQMHSELGVRPE*
Ga0074648_100781723300005512Saline Water And SedimentMLSFESCPEEEFWKVKMTRHIDSCGSVDELKQIATLLVKLAATRQCVIKGLVKDSLDQMHSELGIRPE*
Ga0074649_1002923143300005613Saline Water And SedimentMLSFESCTEEEFWKVKMTRHIDNCSSVDELKQIATLLVKLAATRQCVIKGLVKDSLDQMHSELGVRPE*
Ga0074649_100428143300005613Saline Water And SedimentMLNFEQSPEEEFWKVKMTRYIEDCSSVEELKQIATMLVNIAATRQCVIKGLVKDALDLMDHSYQSEG*
Ga0078746_100015033300005821Marine SedimentMLNFEQSPEEEFWKLRMHREIESTESKEELRTIAKLLVSIAATRQCVIKGLIRDALDQMSSQHVISS*
Ga0078745_111999823300005823Marine SedimentMLTFETSPEEEFWKVKIQRYIQDCSSLSELKEMATLLVEIAATRQTVIKGLVKDTLDQMESKLSVSS*
Ga0075474_1000050123300006025AqueousMLSFESSPEEEFWKERMIRYIDDCSSTEELKQVATLLVKIAATRQAVIKGLVRDALDQMTTEFKDWNSELGISAE*
Ga0098073_1000453273300006734MarineMKGMTLTFQECPEEEFWKVKMERQIEDCKSLEELREMAKLLVRIAATRQVVIKGLIKDALDNMDHWQFSESEG*
Ga0098073_1000620123300006734MarineMLTFETSPEEEFWKVKMKRYIQDCSSLSELKEMATLLVEIAATRQTVIKGLVTDALDQMDSKLGIGS*
Ga0098073_100086053300006734MarineMLNFEVSPEEEFWKVKMCRALDECESKEELRQMAKLLVGIAATRQVVIKSLIKDTLDHWDASQHSISS*
Ga0098073_100113823300006734MarineMLNFEQSPEEEFWKVKMTRYIEDCSSVEELKQIATMLVNIAATRQCVIKGLVKDALDLMDHSYRSEG*
Ga0098073_100387033300006734MarineMLTFNSSPEEEFWKVKMERYIADCSSVSELREVATLLVKIAATRQTVIKGLVKDALDQMESQFGISP*
Ga0098073_101159923300006734MarineMLTFETSPEEEFWKVKMKRYIQDCSSVSELREVATLLVEIAATRQTVIQGLVKDALDTMDSQLGISS*
Ga0098038_1001095143300006735MarineMLTFETSPEEEFWKVKMNRYIENCSSLSELKEVATLLVKVAATRQVVINGLVKDALDQMDSKLGVSS*
Ga0098038_100352583300006735MarineMLSFESSPEEEFWKVKMDRYIEECNSVYELKQIATMLVKLAATRQCVIKGLVKDSLDRMESELRVSSE*
Ga0098037_102799123300006737MarineMLSFESSPEEEFWKVKMDRYIEECNSVYELKQIATMLVKLAATRQCVIKGLVKDSLDRMESELRISSE*
Ga0098074_100312923300006790MarineMLTFKTSPEEEFWKVKMKRYIQDCSSVSELKEVATLLVEIAATRQTVIQGLVKDALDNMESKLGVGS*
Ga0098074_1003355123300006790MarineMLNFEVSPEEEFWKVKMCRALDECDSKEELRQMAKLLVGIAATRQVVIKSLIKDTLDNWDASQHSVSS*
Ga0098074_100699113300006790MarineMLTFETSPEEEFWKVKMKRYIQDCSSLSELKEMATLLVEIAATRQTVIKGLVTDALD
Ga0098074_100852113300006790MarineMLTFETSPEEEFWKVKMKRYIEDCSSVSELREVATLLVEIAATRQTVIQGLVKDALDTMDSQLGIRS*
Ga0098074_103504723300006790MarineMLTFEASPEEEFWKVRMKRYIQDCSSLSELKEMATLLVEIAATRQTVIKGLVKDALDQMESKLGVGS*
Ga0098074_113365823300006790MarineWKVKMERQIEDCKSLEELREMAKLLVRIAATRQVVIKGLIKDALDNMDHWQFSESEG*
Ga0101549_109646123300007117Stylissa Sp. (Marine Sponge)MLKFEASPEEEFWKVKMERYIDDCSSVDELKQIAKLLVNLSATRQVAIKALVKENLAQWESEMGISTK*
Ga0075463_1022183113300007236AqueousMLSFESSPEEEFWKERMIRYIDDCSSTEELKQVATLLVKIAATRQAVIKGLVREALDQMTTEFKDWNSELGISAE*
Ga0111032_105039663300007871Marine SedimentMMLNFKEAPEEEFWKIKMKRYIDECHSKSDLKQIAAMLVDIAATRQTVIKGLVKDT
Ga0114919_1030370223300009529Deep SubsurfaceMSLTFETSPEEEFWKVKMERYIEGCDSVYELKQIATLLVKLAATRQCVIKGLVKDSLNQMESELRISS*
Ga0114919_1039000923300009529Deep SubsurfaceMLTFETSPEEEFWKVKMKRYISDCSSVSELREVATLLVEIAATRQTVIQGLVKDALDTMDSQLGISS*
Ga0115011_1000349443300009593MarineMLDLKPSPEEEFWKIKTVRHIEDCSSVSELKQIATLLATICATRQTVIKALVKENLDHLTKDLTKALEG*
Ga0114922_1038661023300011118Deep SubsurfaceMSLTFETSPEEEFWKVKMERYIESCDSVYELKQIATLLVKLAATRQCVIKGLVKDSLNRMESELRISS*
Ga0160423_1005285183300012920Surface SeawaterMLKFIQSPEDEFWKIKMNRYIDDCNSVSELKQIATMLVAIASTRQTIIKGLIKDAAETMT
Ga0160423_1069611323300012920Surface SeawaterVLSFKQSPEEEFWKIKMTRYIDECSSVTELKQIATLLATICSTRQTVIKALVKENLDQMTENLGKALEG*
Ga0160423_1114981723300012920Surface SeawaterVLSFKQSPEEEFWKIKMTRYIDECNSVTELKQIATLLATICSTRQTVIKALVKENLDQMTENLGKALEG*
Ga0181369_100591923300017708MarineMLSFESSPEEEFWKVKMDRYIEECNSVYELKQIATMLVKLAATRQCVIKGLVKDSLDRMESELSISSE
Ga0181412_107370523300017714SeawaterMLNFEQSPEEEFWKLKMHREIENTESKEELRTIAKLLVSIAATRQCVIKGLVRDALDHMSSQHTVSS
Ga0181404_116201723300017717SeawaterMLTFETSPEEEFWKVKMDRYIENCSSLSELKEVATLLVKVAATRQVVINGLVKDALDQLDSQPSISS
Ga0181390_100330623300017719SeawaterMLNFEQSPEEEFWKLRMHREIENTESKEELRTIAKLLVSIAATRQCVIKGLVRDALDHMSSQHTVSS
Ga0181421_120372113300017741SeawaterMLNFEQSPEEEFWKLRMHREIENTESKEELRTIAKLLVSIAATRQCVIKGLVRDALDHMSSQ
Ga0181397_114870813300017744SeawaterPEEEFWKLRMHREIENTESKEELRTIAKLLVSIAATRQCVIKGLVRDALDHMSSQHTVSS
Ga0181425_124770823300017771SeawaterNFEQSPEEEFWKLRMHREIENTESKEELRTIAKLLVSIAATRQCVIKGLVRDALDHMSSQHTVSS
Ga0181394_120166613300017776SeawaterMLSFESSPEEEFWKVKMERAIEDCSSVYELKQIATMLVKLAATRQCVIKGLVRDSLDRMESELRISSE
Ga0181577_1001270423300017951Salt MarshMLNFEQSPEEEFWKIKMTRYIEDCSSVEELKQIATMLVKIAATRQCVIKGLVKDALDQMDHNFSSEV
Ga0181577_1001973593300017951Salt MarshMLKFEDSPEEEFWKVKMERYIDECSSVDELKQIAKLLVNLSATRQVAIKALVKENLDQWESKMGIRAK
Ga0181576_1003632123300017985Salt MarshMLNFEQSPEEEFWKIKMTRYIEDCSSVEELKQIATMLVNIAATRQCVIKGLVKDALDQMDHNFSSEV
Ga0181576_1093210123300017985Salt MarshMLKFEDSPEEEFWKVKMERYIDECSSVDELKQIAKLLVNLSATRQVAIKALVKENLDQWESKM
Ga0180433_1115028213300018080Hypersaline Lake SedimentMTLSFESSPEEEFWKVKMTRYIEDCSSVDELKQIATLLVKLAATRQCVIKGLVKDSLDHLHQRLES
Ga0181592_1043887523300018421Salt MarshMLSFESSPEEEFWKERMIRYIDDCSSTEELKQVATLLVKIAATRQVMIKGLVRDALDQMTTEFKDWNSELGISAE
Ga0181575_1013820033300020055Salt MarshMLKFEASPEEEFWKVKMERYIDDCSSVDELKQIAKLLVKLSATRQVAIKALVKENLDQWESKMGIRTK
Ga0211658_102574023300020274MarineMLSFESSPEEEFWKVKMDRYIEECNSVYELKQIATMLVKLAATRQCVIKGLVKDSLDRMESELRVSSE
Ga0211532_10000027563300020403MarineMALSFESSPEEEFWSVRMNRHIEDCSSVSELKQIATLLVKLAATRQCVIKGLVKESLDRMESEFIIGS
Ga0211528_1001608043300020417MarineVLSFKQSPEEEFWKIKMTRYIDECSSVTELKQIATLLATICSTRQTVIKALVKENLDQMTENLGKALEG
Ga0211708_1003376133300020436MarineMLTFETSPEEEFWKVKMNRYIENCSSLSELKEVATLLVKVAATRQAVINGLVKDALDQMESQARVSS
Ga0211576_10000117323300020438MarineMLSFESSPEEEFWKVKMERAIEDCNSVYELKQIATMLVKLAATRQCVIKGLVRDSLDRMESELRVSSE
Ga0211558_1039141123300020439MarineMLTFETSPEEEFWKVKMKRYIQDCSSVSELKEVATLLVEIAATRQTVIQGLVKDALEQMDSKLGVGS
Ga0213859_1002559933300021364SeawaterMLKFEASPEEEFWKVKMERYIDDCSSVDELKQIAKLLVNLSATRQVAIKALVKENLDQWESEMGIRTK
Ga0213859_1011807613300021364SeawaterMLKFKTSPEEEFWKVRMERYIDECRSTDELKQIAKLLVNISATRQMVIKSLIQDNLDQWESKRTVSSK
Ga0224711_118959123300021555Stylissa Sp. (Marine Sponge)MLKFEASPEEEFWKVKMERYIDDCSSVDELKQIAKLLVNLSATRQVAIKALVKENLAQWESEMGISTK
Ga0222719_1054083013300021964Estuarine WaterMLNFEQSPEEEFWKVKMTRYIEDCSSVEELKQIATMLVNIAATRQCVIKGLVKDALDLMDHSY
Ga0212026_100546033300022069AqueousMLSFESSPEEEFWKERMIRYIDDCSSTEELKQVATLLVKIAATRQAVIKGLVRDALDQMTTEFKDWNSELGISAE
Ga0212020_109205313300022167AqueousLSFESSPEEEFWKERMIRYIDDCSSTEELKQVATLLVKIAATRQAVIKGLVRDALDQMTTEFKDWNSELGISAE
Ga0212027_100289023300022168AqueousMLSFESSPEEEFWKERIIRYIDDCSSTEELKQVATLLVKIAATRQAVIKGLVRDALDQMTTEFKDWNSELGISAE
Ga0255754_1023950413300022939Salt MarshMLNFEQSPEEEFWKIKMTRYIEDCSSVEELKQIATMLVNIAATRQCVIKGLVKDALD
(restricted) Ga0233412_1004329733300023210SeawaterREIENTESKEELRTIAKLLVSIAATRQCVIKGLIREALDQMSSQHTVSS
(restricted) Ga0255040_1028980723300024059SeawaterMLNFKESPEEEFWKIKMKHYIDECHSKSELKQIAAMLVDIAATRQTVIKGLVKDTLDNMESYL
Ga0209986_10021054113300024433Deep SubsurfaceMLTFETSPEEEFWKVKMKRYISDCSSVSELREVATLLVEIAATRQTVIQGLVKDALDTMDSQLGISS
Ga0209986_1003468633300024433Deep SubsurfaceMLNFEQSPEEEFWKLRMHREIESTESKEELRTIAKLLVSIAATRQCVIKGLVRDALDQMSSQHVIGS
Ga0208018_10093343300025057MarineMKGMTLTFQECPEEEFWKVKMERQIEDCKSLEELREMAKLLVRIAATRQVVIKGLIKDALDNMDHWQFSESEG
Ga0208018_10137133300025057MarineMLNFEVSPEEEFWKVKMCRALDECESKEELRQMAKLLVGIAATRQVVIKSLIKDTLDHWDASQHSISS
Ga0208018_10396223300025057MarineMLTFETSPEEEFWKVKMKRYIQDCSSLSELKEMATLLVEIAATRQTVIKGLVTDALDQMDSKLGIGS
Ga0208018_10615723300025057MarineMLNFEQSPEEEFWKVKMTRYIEDCSSVEELKQIATMLVNIAATRQCVIKGLVKDALDLMDHSYRSEG
Ga0208018_12257013300025057MarineMLTFNSSPEEEFWKVKMERYIADCSSVSELREVATLLVKIAATRQTVIKGLVKDALDQMESQFGISP
Ga0208157_101133723300025086MarineMLSFESSPEEEFWKVKMDRYIEECNSVYELKQIATMLVKLAATRQCVIKGLVKDSLDRMESELRISSE
Ga0208794_1001001203300025093MarineMLTFKTSPEEEFWKVKMKRYIQDCSSVSELKEVATLLVEIAATRQTVIQGLVKDALDNMESKLGVGS
Ga0208794_1001167133300025093MarineMLTFNSSPEEEFWKVKMERYIADCSSVSELREVATLLVKIAATRQTVIKGLVKDALDQMESQFGVSP
Ga0208794_1005032133300025093MarineMLTFETSPEEEFWKVKMKRYIQDCSSLSELKEMATLLVEIAATRQTVIKGLVTDALDQ
Ga0208794_100598143300025093MarineMLTFETSPEEEFWKVKMKRYIEDCSSVSELREVATLLVEIAATRQTVIQGLVKDALDTMDSQLGIRS
Ga0208794_100931233300025093MarineMLNFEVSPEEEFWKVKMCRALDECDSKEELRQMAKLLVGIAATRQVVIKSLIKDTLDNWDASQHSVSS
Ga0208794_104669323300025093MarineMLTFEASPEEEFWKVRMKRYIQDCSSLSELKEMATLLVEIAATRQTVIKGLVKDALDQMESKLGVGS
Ga0208159_104470713300025101MarineMLSFESSPEEEFWKVKMDRYIEECNSVYELKQIATMLVKLAATRQCVIKGLVKDSLDRMESELR
Ga0208666_101004233300025102MarineMLTFETSPEEEFWKVKMNRYIENCSSLSELKEVATLLVKVAATRQVVINGLVKDALDQMDSKLGVSS
Ga0209535_100361723300025120MarineMLNFEQSPEEEFWKLRMHREIENTESKEELRTIAKLLVSIAATRQCVIKGLIREALDQMSSQHTVSS
Ga0209348_1000558163300025127MarineMLSFDSSPEEEFWKVKMTRYIEDCSSVDELKQIATMLVKLAATRQCVIKGLVKDSLDRMESELRISSM
Ga0209194_102809923300025632Pelagic MarineMLNFEQSPEEEFWKLRMHREIESTESKEELRTIAKLLVSIAATRQCVIKGLIRDALDQMSSQHVIGS
(restricted) Ga0255053_1055778023300027868SeawaterMSLTFETSPEEEFWKVKMERYIEDCDSVYELKQIATLLVKLAATRQCVIKGLVKDSLNRMESELRISS
Ga0209404_1011488423300027906MarineMLDLKPSPEEEFWKIKTVRHIEDCSSVSELKQIATLLATICATRQTVIKALVKENLDHLTKDLTKALEG
Ga0135211_100056923300029293Marine HarborMLKFEASPEEEFWKVKMERYIDDCSSVDELKQIAKLLVNLSATRQVAIKALVKENLAQWESEMGIRTK
Ga0135211_101555623300029293Marine HarborMTLSFESSPEEEFWKVKMTRYIEDCSSVDELKQIATMLVKLAATRQCVIKGLVKDSLDHLHQRLES
Ga0135222_100178323300029301Marine HarborMLNFEQSPEEEFWKVKMTRYIEDCSSVEELKQIATMLVNIAATRQCVIKGLVRDALDLMDHNFSSEV
Ga0135212_103664913300029306Marine HarborMLTFETSPEEEFWKVKMKRYIQDCSSVSELKEMATLLVEIAATRQTVIQGLVKDALDQMESKLGVGS
Ga0135226_102042623300029308Marine HarborMLKFEASPEEEFWKVKMERYIDECSSVDELKQIAKLLVNLSATRQVAIKALVKENLDQWESEMGIRTQ
Ga0183755_100434833300029448MarineMTLSFENSPEEEFWKVKMHREIDQCSSVEELRTMAKLLVSIAATRQVVIKGLIKDALDNMHHWQLSESEG
Ga0316203_115342423300032274Microbial MatMSLTFEASPEEEFWKVKMERYIESCDSVYELKQIATLLVKLAATRQCVIKGLVKDSLNRMESELRISS

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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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