Scaffold Ga0209644_1000144

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1000144
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21708
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (76.19%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015401	Metagenome / Metatranscriptome	255	Y
F019030	Metagenome	232	Y
F029244	Metagenome / Metatranscriptome	189	Y
F044733	Metagenome	154	N
F092729	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_100014417	F029244	AGGA	MTMKVSNLKFTTEMLNDVWKGHSVEMPKTDALRIVSNPKAAADFIAEFGDVEIVLNTEYSPRWKVAAFAEGRAEYGKLKQAYCDQFGSN
Ga0209644_100014418	F092729	GGAG	MTSKRYQIQQKLKPLYEIRTRVGTQFGKAKEANDTDTIEIWERVWFAVTNEIVALHEDAHELKEKEIK
Ga0209644_100014420	F044733	AGGA	MANAGRKIVSGVNTLVTVKSVKLDPNSKAYKKAIARSKGVLNGSPDIYQNTTKLMNTKLARKLGYIK
Ga0209644_100014435	F015401	GAG	MKTTETNILNVIYNSHRILIDKITEYDYNGDVAVVKKMCTVINYFGGGATPMIFNVSPYESLVDMHTMVRVWIDCGCPMDSDMFDVPRKWTKQRLHEWVAS
Ga0209644_100014438	F019030	AGCAG	MSKEHIDSRKTYAVQRSTLEAIGIELVIASKEYEKRLLEIAPDEKPLSADQVFYNEQIEYLDGLIKHLHKVTNNELLLI