Scaffold Ga0209434_1054401

Overview

Basic Information

• Taxon OID: 3300025122
• Scaffold ID: Ga0209434_1054401
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1227
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003330	Metagenome / Metatranscriptome	493	Y
F030754	Metagenome	184	Y
F103058	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209434_10544012	F003330	GGAGG	MRKRDAWGKPILRVGDIVQSLPLKDDPGTVMKILKVNANGAHHVAVKWFSWNNGSTTEEHVRELELVSKA
Ga0209434_10544013	F103058	GAGG	MKMVIVFDTEDDQGMRNTLKIVDQLADDYLGRGMNDSYKRNFGKIEFIKMLRTFAQKVKIEVDDDDVTRDGTSLRFAKAFSEEVWVRKEGGGRY
Ga0209434_10544014	F030754	N/A	ALASGSRLAADSTHGVTCSFAGGCRVFDANINKKHEAHWRCEHHGGAKHSRAYAKDEEYANGIPGAERRARFARVRNKQRKAAAPTAHIPSFLDPRPTPPKAKAKKATPKVQGKSQKQLRREAAMAELGLTEADILKFAESN