Scaffold Ga0209434_1005615

Overview

Basic Information

• Taxon OID: 3300025122
• Scaffold ID: Ga0209434_1005615
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5084
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → unclassified Chromatiaceae → Chromatiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007828	Metagenome	344	Y
F092710	Metagenome	107	Y
F094399	Metagenome	106	N
F098066	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209434_100561510	F007828	AGG	MLNSLTTIVRSNQNAVMARVGNGSSAVYTIFDLKTQSNTYTGTLNATKKAWNKHYRNSRQFVTKSGANHRYLGA
Ga0209434_100561514	F098066	GGAGG	LVDFNYDPLNDLVKSEVDKALQYLLDHEMVSMEWDPDLEEMVFYMTEAQRAMPKPDDWDEKAP
Ga0209434_10056154	F092710	N/A	MTYETTERVMRSTNWGADVSIGDKRIRYAFDNKWSVSLIWGDNSYGDANEFGEAVSYEVAVFTPNGDFLSLTEYDDVIGHRTWNEVKFILEKVNDGNAKDLELTY
Ga0209434_10056159	F094399	N/A	MSKRQQRTPQEIIAETEARLERLRLREAKASAKSDPNLAPLLAQVDDLNKDIREAKKLLGEGPQSGVARIAKHQAWIEKIELEMSEAENALEFAEANKAHTQAQVAEAMKAYIETSKEISAEG