NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1102225

Scaffold Ga0209535_1102225


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1102225 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1022
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037204Metagenome168N
F049291Metagenome / Metatranscriptome147Y
F067203Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_11022252F067203AGGAMPQKGGTMTIKWKEIEASGLSEKDKQYMVMYGCTQDDMVSMMNDPMNFIGGHYMLAMSILSDAQECIAYKPDQARQFINKAKYVLRQWKIDNE
Ga0209535_11022253F049291GAGMRTKKVNKKAPEWQQQRIKDQSMRVTILNRTFDLDEPEQAAIAAHQGRRYP
Ga0209535_11022254F037204AGGAGMFDVNVYKDLSMYDFAMDVYQKAMHMKHDQGVEHYDVQEIIHHLQFILNTDNA

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