Scaffold Ga0209535_1100143

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1100143
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1040
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F090883	Metagenome / Metatranscriptome	108	Y
F092702	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_11001432	F000720	GAGG	MTLQEDKIVRATIPDRMMSTTFTLPIDERKVVGIVNYIADENGLIPMAFWVKIKPTDSYLDRELRASGKLISRCLQHGESLKDLADTLSQDNIIGQMANYLHKNMDDIIMGVPMDKKQRMLSTDPYASQMKE
Ga0209535_11001433	F092702	N/A	MVVNFRYIDRLNDTIDTMWHEIEQVKETNISLYQFIEEHGNDITGR
Ga0209535_11001434	F090883	N/A	PGGRVRMVTIALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGERILRAAGKIH