Scaffold Ga0209535_1057527

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1057527
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1611
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005743	Metagenome / Metatranscriptome	391	Y
F018266	Metagenome / Metatranscriptome	236	N
F028035	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10575272	F018266	GAGG	MFRVILEGKFRENPINLSRAVKLLYNQDFTGSIRLENILWWKKYFLKVIHLRVLYPKTGYIQIVKIYRDKKLSIRVVTIPSGSDKRELLVLNKIYGGNNG
Ga0209535_10575274	F005743	AGGAG	MKRNLIVYKVDYVNRHEDYNTQTGRFVRTKRIVMTPNEVDQTDGYWRNHRNVEKKFSKQMNNGAEDAYWDCKYRVMRVRKA
Ga0209535_10575276	F028035	GAG	MITYEVMQQVEGDTEKHSNYELVQYEFPFPENSVLIERDKEMNRILNKPIITIANDSNNCQQ