Scaffold Ga0209535_1053717

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1053717
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1696
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025414	Metagenome	202	Y
F037480	Metagenome	168	Y
F054844	Metagenome	139	Y
F106118	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10537171	F025414	GGA	MQVGSLVRETMDGNIGVILAWENDGWLVNFPKHGMVFHMMPRLLEVIDESR
Ga0209535_10537173	F106118	GAGG	MQVGDLVRCTTVDGKPVGLIVERFNPAHNPLDAVAFGSRPDIFYVLIPGYEDPFPIRTRQMELVNASR
Ga0209535_10537174	F054844	GGAG	MQVGDLVKWKGSIGLVMGVCKKRWAAVDDVWVLWTDKPKPKIEAGRFLEVLNASR
Ga0209535_10537175	F037480	GGAGG	MQVGDLVHMPGAMEKITGIVLRTKPRGHLQKDRVQVYWVEDAEASWEPIKWLAVINASR